RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 RAET1LQ5VY80 246 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 AAGABQ6PD74 315 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 SERPINA11Q86U17 422 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 CMIPQ8IY22 773 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 C11orf65Q8NCR3 313 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 NAXEQ8NCW5 288 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 TNIP2Q8NFZ5 429 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 OR52P1PQ8NH57 321 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 OR10A6Q8NH74 314 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 POLDIP3Q9BY77 421 aaKnown RBP15.99■□□□□ 0.15
COL7A1-205ENST00000465238 FOXD3Q9UJU5 478 aaPredicted RBP15.99■□□□□ 0.15
COL7A1-205ENST00000465238 ICAM5Q9UMF0 924 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 VDAC3Q9Y277 283 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 MED12Q93074 2177 aa15.99■□□□□ 0.15
COL7A1-205ENST00000465238 DSPPQ9NZW4 1301 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 RPS4Y1P22090 263 aaKnown RBP15.98■□□□□ 0.15
COL7A1-205ENST00000465238 CHMP24386 653 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 PGM1P36871 562 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 NUDT2P50583 147 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 CBFBQ13951 182 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 LARS2Q15031 903 aaKnown RBP15.98■□□□□ 0.15
COL7A1-205ENST00000465238 ADRM1Q16186 407 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 LIN52Q52LA3 116 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 NSUN5P2Q63ZY6 315 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 ENPP6Q6UWR7 440 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 ARPINQ7Z6K5 226 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 KRT73Q86Y46 540 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 HIPK4Q8NE63 616 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 OR5W2Q8NH69 310 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 BCAS4Q8TDM0 211 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 NRGNQ92686 78 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 NINJ1Q92982 152 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 RNASE6Q93091 150 aaKnown RBP15.98■□□□□ 0.15
COL7A1-205ENST00000465238 HOPXQ9BPY8 73 aaPredicted RBP15.98■□□□□ 0.15
COL7A1-205ENST00000465238 PIGQQ9BRB3 760 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 UGT2B28Q9BY64 529 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 PIF1Q9H611 641 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 ARMC7Q9H6L4 198 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 MED17Q9NVC6 651 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 CAMK2AQ9UQM7 478 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 ANGPT4Q9Y264 503 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 IFT52Q9Y366 437 aa15.98■□□□□ 0.15
COL7A1-205ENST00000465238 ABCA4P78363 2273 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 DOCK7Q96N67 2140 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 CD8B2A6NJW9 211 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 LINC01387J3KSC0 135 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 NID1P14543 1247 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 ETS2P15036 469 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 IST1P53990 364 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 GFRA1P56159 465 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 SKP2Q13309 424 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 ZSWIM7Q19AV6 140 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF311Q5JNZ3 666 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 POMZP3Q6PJE2 187 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 HACD2Q6Y1H2 254 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 NET1Q7Z628 596 aaPredicted RBP15.97■□□□□ 0.15
COL7A1-205ENST00000465238 VRK2Q86Y07 508 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 PTOV1Q86YD1 416 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 SLC30A8Q8IWU4 369 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 OR5M1Q8NGP8 315 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 GPR119Q8TDV5 335 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 ZBTB8AQ96BR9 441 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 ARSGQ96EG1 525 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF607Q96SK3 696 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 SPATA5L1Q9BVQ7 753 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 SPATA9Q9BWV2 254 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 RASSF1Q9NS23 344 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 CRIM1Q9NZV1 1036 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 TAGLN3Q9UI15 199 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 AP3M1Q9Y2T2 418 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 MPDZO75970 2070 aa15.97■□□□□ 0.15
COL7A1-205ENST00000465238 OR2M5A3KFT3 312 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 FAM221AA4D161 298 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 CLDN24A6NM45 220 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 KDM4EB2RXH2 506 aaPredicted RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 SERPINB7O75635 380 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 THBS1P07996 1170 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 PABPC4LP0CB38 370 aaKnown RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 PGCP20142 388 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF136P52737 540 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 B3GALT5-AS1P59052 145 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 SNTB1Q13884 538 aaKnown RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 PLPPR5Q32ZL2 321 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 MRPL2Q5T653 305 aaKnown RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 FAM91A1Q658Y4 838 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 FAM222BQ8WU58 562 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 CNOT9Q92600 299 aaKnown RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 WDYHV1Q96HA8 205 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 FOXC2Q99958 501 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 GPATCH1Q9BRR8 931 aaKnown RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 CLEC4MQ9H2X3 399 aaPredicted RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 EXOSC3Q9NQT5 275 aaKnown RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 STOML1Q9UBI4 398 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 EDARQ9UNE0 448 aa15.96■□□□□ 0.15
COL7A1-205ENST00000465238 ZNF443Q9Y2A4 671 aaPredicted RBP15.96■□□□□ 0.15
COL7A1-205ENST00000465238 PRRC2AP48634 2157 aaKnown RBP15.95■□□□□ 0.14
COL7A1-205ENST00000465238 MBD3L4A6NDZ8 208 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-205ENST00000465238 MBD3L3A6NE82 208 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-205ENST00000465238 MBD3L5A6NJ08 208 aaPredicted RBP15.95■□□□□ 0.14
COL7A1-205ENST00000465238 LINGO3P0C6S8 592 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms