RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 KCNJ10P78508 379 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 RNPS1Q15287 305 aaKnown RBP18.96■□□□□ 0.63
HMGB3-205ENST00000455596 SYPL1Q16563 259 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 EXOC3L2Q2M3D2 409 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 TIGD2Q4W5G0 525 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 EPGNQ6UW88 154 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 PNPT1Q8TCS8 783 aaKnown RBP18.96■□□□□ 0.63
HMGB3-205ENST00000455596 LRRC8CQ8TDW0 803 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 TRNT1Q96Q11 434 aaKnown RBP18.96■□□□□ 0.63
HMGB3-205ENST00000455596 KLHL4Q9C0H6 718 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 RMND5AQ9H871 391 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 FANCFQ9NPI8 374 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 SERINC1Q9NRX5 453 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 PLEKHA6Q9Y2H5 1048 aa18.96■□□□□ 0.63
HMGB3-205ENST00000455596 MED13LQ71F56 2210 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 ANP32DO95626 131 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 TTMPQ5BVD1 217 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 COX20Q5RI15 118 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 PAMR1Q6UXH9 720 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 DNAJC14Q6Y2X3 702 aaPredicted RBP18.95■□□□□ 0.62
HMGB3-205ENST00000455596 LRRC74BQ6ZQY2 392 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 MSANTD1Q6ZTZ1 278 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 BEND4Q6ZU67 534 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 FCRLAQ7L513 359 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 HMGN2P46Q86SG4 172 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 STK32CQ86UX6 486 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 MIER2Q8N344 545 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 ANKFN1Q8N957 763 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 ZNF563Q8TA94 476 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 ABHD3Q8WU67 409 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 ZG16BQ96DA0 208 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 FOXC2Q99958 501 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 QRSL1Q9H0R6 528 aaKnown RBP18.95■□□□□ 0.62
HMGB3-205ENST00000455596 SLC38A1Q9H2H9 487 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 PLEKHF2Q9H8W4 249 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 ACER3Q9NUN7 267 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 SPG11Q96JI7 2443 aa18.95■□□□□ 0.62
HMGB3-205ENST00000455596 A0A1W2PNR3 127 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 CHRM4P08173 479 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 MAGEA8P43361 318 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 POLR2JP52435 117 aaKnown RBP18.94■□□□□ 0.62
HMGB3-205ENST00000455596 RAC3P60763 192 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 MERTKQ12866 999 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 TMEM201Q5SNT2 666 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 PLEKHM3Q6ZWE6 761 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 ZNF550Q7Z398 422 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 ARFGAP2Q8N6H7 521 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 GOLGA6L1Q8N7Z2 621 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 ITCHQ96J02 903 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 C12orf49Q9H741 205 aa18.94■□□□□ 0.62
HMGB3-205ENST00000455596 EXOSC3Q9NQT5 275 aaKnown RBP18.94■□□□□ 0.62
HMGB3-205ENST00000455596 POLR3GO15318 223 aaPredicted RBP18.93■□□□□ 0.62
HMGB3-205ENST00000455596 BCAS1O75363 584 aaPredicted RBP18.93■□□□□ 0.62
HMGB3-205ENST00000455596 PRKD3O94806 890 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 TGDSO95455 350 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 RAF1P04049 648 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 ZCCHC18P0CG32 403 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 NR2F1P10589 423 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 CRYGSP22914 178 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 RYKP34925 604 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 CMIPQ8IY22 773 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 SLC43A2Q8N370 569 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 OR9I1Q8NGQ6 314 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 SLC25A43Q8WUT9 341 aaPredicted RBP18.93■□□□□ 0.62
HMGB3-205ENST00000455596 DYDC1Q8WWB3 177 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 OR5B2Q96R09 309 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 MTHFD2LQ9H903 347 aaPredicted RBP18.93■□□□□ 0.62
HMGB3-205ENST00000455596 GP6Q9HCN6 339 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 SLCO1B3Q9NPD5 702 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 SLC6A13Q9NSD5 602 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 C6orf203Q9P0P8 240 aaPredicted RBP18.93■□□□□ 0.62
HMGB3-205ENST00000455596 KLHL13Q9P2N7 655 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 HRNRQ86YZ3 2850 aaPredicted RBP18.93■□□□□ 0.62
HMGB3-205ENST00000455596 ABCA4P78363 2273 aa18.93■□□□□ 0.62
HMGB3-205ENST00000455596 AKAP6Q13023 2319 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 FREM1Q5H8C1 2179 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 FAM234BA2RU67 622 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 AGAP5A6NIR3 686 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 CLDN24A6NM45 220 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 IL7RP16871 459 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 APOBEC1P41238 236 aaKnown RBP18.92■□□□□ 0.62
HMGB3-205ENST00000455596 STX1BP61266 288 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 KEAP1Q14145 624 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 GNA13Q14344 377 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 ANKRD34AQ69YU3 496 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 HDXQ7Z353 690 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 TUSC5Q8IXB3 177 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 WDR60Q8WVS4 1066 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 PMM1Q92871 262 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 ZC3HAV1LQ96H79 300 aaKnown RBP18.92■□□□□ 0.62
HMGB3-205ENST00000455596 TACO1Q9BSH4 297 aaKnown RBP18.92■□□□□ 0.62
HMGB3-205ENST00000455596 CXXC4Q9H2H0 198 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 TCF7L2Q9NQB0 619 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 ARGLU1Q9NWB6 273 aaPredicted RBP18.92■□□□□ 0.62
HMGB3-205ENST00000455596 P2RX2Q9UBL9 471 aa18.92■□□□□ 0.62
HMGB3-205ENST00000455596 SPIN1Q9Y657 262 aaPredicted RBP18.92■□□□□ 0.62
HMGB3-205ENST00000455596 IGHV3-15A0A0B4J1V0 119 aa18.91■□□□□ 0.62
HMGB3-205ENST00000455596 PPP3CBP16298 524 aa18.91■□□□□ 0.62
HMGB3-205ENST00000455596 RPS4Y1P22090 263 aaKnown RBP18.91■□□□□ 0.62
HMGB3-205ENST00000455596 ENPP1P22413 925 aa18.91■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 74.3 ms