RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NCBP2-AS2Q69YL0 99 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 NUDT13Q86X67 352 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 STPG2Q8N412 459 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 BBS10Q8TAM1 723 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 THEM6Q8WUY1 208 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 SMPDL3BQ92485 455 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 L3HYPDHQ96EM0 354 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 C1orf74Q96LT6 269 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 ZNF559Q9BR84 538 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 IKZF4Q9H2S9 585 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 UBQLN3Q9H347 655 aa12.5□□□□□ -0.41
USP40-208ENST00000450966 SOCS5O75159 536 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 LY86O95711 162 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 AHCYP23526 432 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 HRH2P25021 359 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 NFYBP25208 207 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 HTR2CP28335 458 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 GGT5P36269 586 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 CCR9P51686 369 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 POLR2GP62487 172 aaKnown RBP eCLIP12.49□□□□□ -0.41
USP40-208ENST00000450966 ARL6IP1Q15041 203 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ARSIQ5FYB1 569 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 B3GLCTQ6Y288 498 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 DPPA4Q7L190 304 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 VRK3Q8IV63 474 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 NAXDQ8IW45 347 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 SGPP2Q8IWX5 399 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 KDF1Q8NAX2 398 aaPredicted RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 OR1J1Q8NGS3 322 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 OR2G2Q8NGZ5 317 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ZNF586Q9NXT0 402 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 DHDHQ9UQ10 334 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 LOC105371267A0A1B0GV96 52 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 FABP4P15090 132 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 CAV2P51636 162 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 RPS21P63220 83 aaKnown RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 TXNDC8Q6A555 127 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 OR52P1PQ8NH57 321 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ALOXE3Q9BYJ1 711 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 TBL1XR1Q9BZK7 514 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 CAMK2AQ9UQM7 478 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 SRPX2O60687 465 aaPredicted RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 PDYNP01213 254 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 SLC35E2BP0CK96 405 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 SLC2A1P11166 492 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 LAP3P28838 519 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 MTNR1BP49286 362 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 AKR1C2P52895 323 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 AKR1C1Q04828 323 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 C22orf39Q6P5X5 142 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 RBMS3Q6XE24 437 aaKnown RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 IL34Q6ZMJ4 242 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 THAP4Q8WY91 577 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 TFAP2BQ92481 460 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 MTERF1Q99551 399 aaKnown RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 ADAMTS5Q9UNA0 930 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ENPP4Q9Y6X5 453 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 GABRPO00591 440 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 DRD1P21728 446 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 MS4A13Q5J8X5 152 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 MRPL10Q7Z7H8 261 aaKnown RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 CCDC116Q8IYX3 515 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ZNF784Q8NCA9 323 aaPredicted RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 OR1J2Q8NGS2 313 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 SLC25A44Q96H78 314 aaPredicted RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 DOK1Q99704 481 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ENKD1Q9H0I2 346 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 SPACA1Q9HBV2 294 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 NLE1Q9NVX2 485 aaPredicted RBP12.49□□□□□ -0.41
USP40-208ENST00000450966 SERTAD3Q9UJW9 196 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 TMEM14AQ9Y6G1 99 aa12.49□□□□□ -0.41
USP40-208ENST00000450966 ALDOCP09972 364 aaKnown RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 ACP5P13686 325 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CSNK2A2P19784 350 aaPredicted RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 SMN1Q16637 294 aaKnown RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 TXNRD3NBQ6F5E7 133 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 KIAA0907Q7Z7F0 614 aaPredicted RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 OR56B1Q8NGI3 324 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 RNF128Q8TEB7 428 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 NOL4LQ96MY1 436 aaPredicted RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 C20orf24Q9BUV8 137 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CHRNA9Q9UGM1 479 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 DNAJC15Q9Y5T4 150 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 URGCP-MRPS24S4R325 110 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ZNF726A6NNF4 738 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ANGPTL7O43827 346 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 AQP8O94778 261 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 LCN6P62502 163 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CES4AQ5XG92 561 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 NIPAL3Q6P499 406 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 GPR155Q7Z3F1 870 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 GLYATL1Q969I3 302 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 IMP4Q96G21 291 aaKnown RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 VAMP8Q9BV40 100 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ALG8Q9BVK2 526 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 PARD6AQ9NPB6 346 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 PCDHGA2Q9Y5H1 932 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 A0A0U1RQK1 487 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CDHR4A6H8M9 788 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 B4DGG1 531 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 68.8 ms