RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 SDF2Q99470 211 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 HDHD5Q9BXW7 423 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 EGLN3Q9H6Z9 239 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 ANKRD10Q9NXR5 420 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 RLFQ13129 1914 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 FAM183AA6NL82 134 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 AGAP14A8MT82 685 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 APOC1P02654 83 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 GYPBP06028 91 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SLC2A2P11168 524 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 DLSTP36957 453 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 GIPRP48546 466 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CCL11P51671 97 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 RAB25P57735 213 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 GLO1Q04760 184 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 DUSP7Q16829 419 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM201Q5SNT2 666 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 FBXO42Q6P3S6 717 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF836Q6ZNA1 936 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 RASSF6Q6ZTQ3 369 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SLC35F2Q8IXU6 374 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SNIP1Q8TAD8 396 aaKnown RBP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 KLHL15Q96M94 604 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 PRR14Q9BWN1 585 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 AASSQ9UDR5 926 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SLC6A5Q9Y345 797 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CBFA2T3O75081 653 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 F13BP05160 661 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 DPP4P27487 766 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 EPHA8P29322 1005 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 POU3F1Q03052 451 aaPredicted RBP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 SF3B4Q15427 424 aaKnown RBP eCLIP6.87□□□□□ -1.31
SYNE1-213ENST00000448038 DNAJC5GQ8N7S2 189 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 OR2I1PQ8NGU4 316 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 CSF3RQ99062 836 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 AMBRA1Q9C0C7 1298 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 NDUFAF4Q9P032 175 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 EBF1Q9UH73 591 aa6.87□□□□□ -1.31
SYNE1-213ENST00000448038 TNFSF15O95150 251 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CHMP24386 653 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CA5AP35218 305 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CSNK1A1P48729 337 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PRKXP51817 358 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF829Q3KNS6 432 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 GPR139Q6DWJ6 353 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ASB18Q6ZVZ8 466 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SNX29P2Q8IUI4 249 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CNOT9Q92600 299 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 LGALS12Q96DT0 336 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ALG8Q9BVK2 526 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SMOC1Q9H4F8 434 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 UCKL1Q9NWZ5 548 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 NPFFR2Q9Y5X5 522 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SPAG17Q6Q759 2223 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 IGHV1OR21-1A0A087WYE8 117 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 A0A0A6YYD5 115 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 C2orf72A6NCS6 295 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ATE1O95260 518 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ZGLP1P0C6A0 271 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CYB561P49447 251 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 DAPP51397 102 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PSPHP78330 225 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SEC23BQ15437 767 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 MBOAT2Q6ZWT7 520 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CMIPQ8IY22 773 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM102Q8N9M5 508 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PAPD5Q8NDF8 572 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 B3GNT7Q8NFL0 401 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 C15orf40Q8WUR7 153 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CNRIP1Q96F85 164 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 S100A16Q96FQ6 103 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM41AQ96HV5 264 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 OLAHQ9NV23 265 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 MED11Q9P086 117 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 MBD1Q9UIS9 605 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ST14Q9Y5Y6 855 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMED7-TICAM2A0A0A6YYA0 188 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PRAMEF25A6NGN4 478 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CENPBD1B2RD01 187 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CTSVO60911 334 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 RBMXL2O75526 392 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 DDAH2O95865 285 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 EIF2B1Q14232 305 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ARHGAP11BQ3KRB8 267 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 PLAG1Q6DJT9 500 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TUBA3EQ6PEY2 450 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 Q6ZPB1 254 aaPredicted RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM151AQ8N4L1 468 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 MS4A15Q8N5U1 240 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 SIRT6Q8N6T7 355 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 LSM14AQ8ND56 463 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 OR13C3Q8NGS6 347 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 THOC3Q96J01 351 aaKnown RBP6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF160Q9HCG1 818 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 ING3Q9NXR8 418 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 STUB1Q9UNE7 303 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CAMK2AQ9UQM7 478 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 TMED7Q9Y3B3 224 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 CMAHPQ9Y471 501 aa6.86□□□□□ -1.31
SYNE1-213ENST00000448038 RP1L1Q8IWN7 2480 aaPredicted RBP6.86□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms