RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 AK6Q9Y3D8 172 aaKnown RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 NEDD8-MDP1E9PL57 170 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 KIAA0355O15063 1070 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 KRT33AO76009 404 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 IGF2P01344 180 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 RLN2P04090 185 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 UCHL1P09936 223 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 PTNP21246 168 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 PYCR1P32322 319 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 TAF12Q16514 161 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 MPP7Q5T2T1 576 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 LCTLQ6UWM7 567 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 Q6ZVU0 165 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 NUDT13Q86X67 352 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 C2orf73Q8N5S3 287 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 EID2Q8N6I1 236 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 NLGN2Q8NFZ4 835 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 OR52B4Q8NGK2 314 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 OR5M1Q8NGP8 315 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 ZNF671Q8TAW3 534 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 SMAP2Q8WU79 429 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 SLC25A38Q96DW6 304 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 SLC41A3Q96GZ6 507 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 TEAD3Q99594 435 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 C1QTNF2Q9BXJ5 285 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 LDHAL6BQ9BYZ2 381 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 NKX6-2Q9C056 277 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 ADGRL4Q9HBW9 690 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 ANKRD10Q9NXR5 420 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 COA4Q9NYJ1 87 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 FXYD6-FXYD2A0A087WZ82 144 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 ANKRD61A6NGH8 418 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 SLC22A31A6NKX4 558 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 NDUFB6O95139 128 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 GALTP07902 379 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 SBK2P0C263 348 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 CKBP12277 381 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 MPGP29372 298 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 RECQLP46063 649 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 NCBP2P52298 156 aaKnown RBP eCLIP9.92□□□□□ -0.82
USP54-204ENST00000422491 DLX5P56178 289 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 DEFA5Q01523 94 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 C2orf68Q2NKX9 166 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 OR7E24Q6IFN5 339 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 TMEM64Q6YI46 380 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 USP50Q70EL3 339 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 SSX6Q7RTT6 188 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 OVCH1Q7RTY7 1134 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 UBE3DQ7Z6J8 389 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 HDDC3Q8N4P3 179 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 PXT1Q8NFP0 134 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 OR6K3Q8NGY3 331 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 ORAI1Q96D31 301 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 C16orf58Q96GQ5 468 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 FXYD6Q9H0Q3 95 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 DNTTIP1Q9H147 329 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 BARX1Q9HBU1 254 aaPredicted RBP9.92□□□□□ -0.82
USP54-204ENST00000422491 SLC13A4Q9UKG4 626 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 YIPF1Q9Y548 306 aa9.92□□□□□ -0.82
USP54-204ENST00000422491 DENND4CQ5VZ89 1909 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 CXorf51AA0A1B0GTR3 108 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 LILRB5O75023 590 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 KHDRBS3O75525 346 aaKnown RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 ARL6IP5O75915 188 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 OLFM2O95897 454 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 SERPINA3P01011 423 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 PTH2RP49190 550 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 AKR1D1P51857 326 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 TAS2R38P59533 333 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 GPR85P60893 370 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 RPS11P62280 158 aaKnown RBP eCLIP9.91□□□□□ -0.82
USP54-204ENST00000422491 TXNDC8Q6A555 127 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 HEPHL1Q6MZM0 1159 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 LINC00469Q8N7U9 141 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 SLC25A32Q9H2D1 315 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 ESRP2Q9H6T0 727 aaKnown RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 SLC35C2Q9NQQ7 365 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 ACTR10Q9NZ32 417 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 NDRG3Q9UGV2 375 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 MRTO4Q9UKD2 239 aaKnown RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 ADAMTS4O75173 837 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 OR5F1O95221 314 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 SPDEFO95238 335 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 ZIC2O95409 532 aaPredicted RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 VSIG10L2P0DP72 767 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 CYBAP13498 195 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 FUT1P19526 365 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 MAPK3P27361 379 aaPredicted RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 DCTDP32321 178 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 ANXA11P50995 505 aaKnown RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 ARFIP1P53367 373 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 RGS8P57771 180 aaPredicted RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 MC2RQ01718 297 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 OC90Q02509 493 aaPredicted RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 HFEQ30201 348 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 NUDT18Q6ZVK8 323 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 LNX2Q8N448 690 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 RELL2Q8NC24 303 aaPredicted RBP9.91□□□□□ -0.82
USP54-204ENST00000422491 SLAIN1Q8ND83 568 aa9.91□□□□□ -0.82
USP54-204ENST00000422491 FANK1Q8TC84 345 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms