RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 EXOSC3Q9NQT5 275 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 SLC35A3Q9Y2D2 325 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 IFT52Q9Y366 437 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 MRPS18CQ9Y3D5 142 aaKnown RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 LIPGQ9Y5X9 500 aa8.35□□□□□ -1.07
VPS53-203ENST00000401468 MAP1AP78559 2803 aaPredicted RBP8.35□□□□□ -1.07
VPS53-203ENST00000401468 NPIPA5A0A0B4J1W7 369 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 A0A1B0GTH9 108 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 A0A1B0GUH1 482 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 SERINC4A6NH21 518 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 C5orf58C9J3I9 102 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 NPIPA7E9PJI5 369 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 KLRC4-KLRK1H3BQV0 150 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 SYT5O00445 386 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 FAAHO00519 579 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 CXCR6O00574 342 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 SCDO00767 359 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ACOT8O14734 319 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 TFECO14948 347 aaPredicted RBP8.34□□□□□ -1.07
VPS53-203ENST00000401468 EIF4E2O60573 245 aaKnown RBP8.34□□□□□ -1.07
VPS53-203ENST00000401468 BCAS1O75363 584 aaPredicted RBP8.34□□□□□ -1.07
VPS53-203ENST00000401468 ANGPTL1O95841 491 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 TPOP07202 933 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 NPIPA8P0DM63 369 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 CD247P20963 164 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 KCNJ5P48544 419 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 KCNJ10P78508 379 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 DMTNQ08495 405 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 C17orf67Q0P5P2 114 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 SKP2Q13309 424 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 TRIM25Q14258 630 aaKnown RBP8.34□□□□□ -1.07
VPS53-203ENST00000401468 LIN52Q52LA3 116 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 PRAMEF20Q5VT98 475 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 TIGD3Q6B0B8 471 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 LCN8Q6JVE9 175 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 COMTD1Q86VU5 262 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 KRT73Q86Y46 540 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 MCEMP1Q8IX19 187 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 PEX5LQ8IYB4 626 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 OR5M3Q8NGP4 307 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 RASSF5Q8WWW0 418 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 RELTQ969Z4 430 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 TAMM41Q96BW9 452 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ASB9Q96DX5 294 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ARSGQ96EG1 525 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 RNF145Q96MT1 663 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ZNF607Q96SK3 696 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 SPATA5L1Q9BVQ7 753 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 PINK1Q9BXM7 581 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 METTL7AQ9H8H3 244 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ZDHHC11Q9H8X9 412 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 GALNT9Q9HCQ5 603 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 QPCTLQ9NXS2 382 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ADA2Q9NZK5 511 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ACTR3BQ9P1U1 418 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 MAGEL2Q9UJ55 1249 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ICAM5Q9UMF0 924 aa8.34□□□□□ -1.07
VPS53-203ENST00000401468 ZNF443Q9Y2A4 671 aaPredicted RBP8.34□□□□□ -1.07
VPS53-203ENST00000401468 C7orf72A4D263 438 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 NKX2-6A6NCS4 301 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 M0QX08 132 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ARPC2O15144 300 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 NDUFB5O43674 189 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 PEX1O43933 1283 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SERPINB7O75635 380 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 LGI1O95970 557 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SEMG1P04279 462 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 CELA3AP09093 270 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 IL7RP16871 459 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ME2P23368 584 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ACAA2P42765 397 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 RFX3P48380 749 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 DNASE1L1P49184 302 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 CLK3P49761 638 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 SUMO3P55854 103 aaPredicted RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 KRTAP10-9P60411 292 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SELENOWP63302 87 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 MS4A2Q01362 244 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ZNF117Q03924 483 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 TRAP1Q12931 704 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 SNTB1Q13884 538 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 LARS2Q15031 903 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 NRF1Q16656 503 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ZSCAN26Q16670 478 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 C11orf91Q3C1V1 193 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 EIPR1Q53HC9 387 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 MTX3Q5HYI7 312 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 MRPL2Q5T653 305 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 ZNF836Q6ZNA1 936 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 CBLL1Q75N03 491 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 EIF3MQ7L2H7 374 aaKnown RBP8.33□□□□□ -1.08
VPS53-203ENST00000401468 MARCH3Q86UD3 253 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 IFNEQ86WN2 208 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 VRK2Q86Y07 508 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 DOLPP1Q86YN1 238 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 PLCZ1Q86YW0 608 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 SPPL2CQ8IUH8 684 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ARMC8Q8IUR7 673 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 ULK2Q8IYT8 1036 aa8.33□□□□□ -1.08
VPS53-203ENST00000401468 EID3Q8N140 333 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms