RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PSMD4P55036 377 aaKnown RBP3.59□□□□□ -1.83
HMGB1-204ENST00000399489 RAB10P61026 200 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 GUCY2DQ02846 1103 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 STX3Q13277 289 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SNTA1Q13424 505 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SF3B4Q15427 424 aaKnown RBP eCLIP3.59□□□□□ -1.831e-8■■■□□ 19.1
HMGB1-204ENST00000399489 PPP1R3AQ16821 1122 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 LRRC37A5PQ49AS3 106 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SLC35D3Q5M8T2 416 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 EOGTQ5NDL2 527 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 NEPROQ6NW34 567 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 ENPP6Q6UWR7 440 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SLC35D2Q76EJ3 337 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 PID1Q7Z2X4 250 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 DCXRQ7Z4W1 244 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CATSPERDQ86XM0 798 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 PRR26Q8N8Z3 221 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 C8orf31Q8N9H6 132 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 OR8J2Q8NGG1 315 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 OLIG1Q8TAK6 271 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 FANK1Q8TC84 345 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 PHLDA1Q8WV24 401 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-204ENST00000399489 PIH1D2Q8WWB5 315 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 BADQ92934 168 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 NAT6Q93015 286 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 C8orf44Q96CB5 159 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 TIMD4Q96H15 378 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CPB2Q96IY4 423 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 CEP19Q96LK0 163 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 C4orf45Q96LM5 186 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SYT11Q9BT88 431 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 POTEKPQ9BYX7 375 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 IKZF5Q9H5V7 419 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 OLFML3Q9NRN5 406 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 TMEM45AQ9NWC5 275 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 RBAKQ9NYW8 714 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-204ENST00000399489 IFNKQ9P0W0 207 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 GHRLQ9UBU3 117 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 ZDHHC2Q9UIJ5 367 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 FBXL4Q9UKA2 621 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 USP16Q9Y5T5 823 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 PUS1Q9Y606 427 aaKnown RBP eCLIP3.59□□□□□ -1.83
HMGB1-204ENST00000399489 R4GN57 208 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 DISP1Q96F81 1524 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 SRCAPQ6ZRS2 3230 aa3.59□□□□□ -1.83
HMGB1-204ENST00000399489 hDV102S1A0JD36 115 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PRSS37A4D1T9 235 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GAGE12JA6NER3 117 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SMCO2A6NFE2 343 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 FAM74A7A6NL05 159 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ZBTB5O15062 677 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 AIREO43918 545 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 WDR1O75083 606 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 KRT33AO76009 404 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NOL4O94818 638 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 AHSA1O95433 338 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NR3C1P04150 777 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ATP1B1P05026 303 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 H2BFMP0C1H6 154 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 FAM106CPP0CH98 169 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MBL2P11226 248 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 HOXB8P17481 243 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GM2AP17900 193 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 RPL13AP40429 203 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PCYT1AP49585 367 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 EMP2P54851 167 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 GPX6P59796 221 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 S100A12P80511 92 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CDKL1Q00532 357 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 KLRB1Q12918 225 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 SELENBP1Q13228 472 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 RBM39Q14498 530 aaKnown RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF234Q14588 700 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 KYAT1Q16773 422 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 VPS26BQ4G0F5 336 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 DNAL1Q4LDG9 190 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 FAM74A3Q4VXF1 159 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LY6G6FQ5SQ64 297 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MANEAQ5SRI9 462 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 TCEAL6Q6IPX3 200 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 STEAP1BQ6NZ63 245 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ULK3Q6PHR2 472 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LANCL3Q6ZV70 420 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ARCQ7LC44 396 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PIP4P1Q86T03 277 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NUDCD3Q8IVD9 361 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CCDC50Q8IVM0 306 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 LINC00518Q8N0U6 118 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CLIP4Q8N3C7 705 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 CYB561A3Q8NBI2 242 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 OR5L2Q8NGL0 311 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 MAGEC3Q8TD91 643 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 FCAMRQ8WWV6 532 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 HTR3CQ8WXA8 447 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NR4A3Q92570 626 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 PNPLA2Q96AD5 504 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 C18orf25Q96B23 403 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 ZNF514Q96K75 400 aaPredicted RBP3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NSMCE3Q96MG7 304 aa3.58□□□□□ -1.84
HMGB1-204ENST00000399489 NEDD4LQ96PU5 975 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms