RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 ESPNLQ6ZVH7 1005 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 NET1Q7Z628 596 aaPredicted RBP19.54■□□□□ 0.72
CLN3-207ENST00000395653 SERPINA11Q86U17 422 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 LILRA2Q8N149 483 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 C9orf106Q8NAJ2 232 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 C11orf65Q8NCR3 313 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 OR8J3Q8NGG0 315 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 ZNF563Q8TA94 476 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 ADGRG7Q96K78 797 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 KLHL15Q96M94 604 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 SLC39A3Q9BRY0 314 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 SPATA9Q9BWV2 254 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 MYLK2Q9H1R3 596 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 ARMC7Q9H6L4 198 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 NANOGQ9H9S0 305 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 PAQR5Q9NXK6 330 aaPredicted RBP19.54■□□□□ 0.72
CLN3-207ENST00000395653 FAM53CQ9NYF3 392 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 PRDM4Q9UKN5 801 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 ZNF175Q9Y473 711 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 SETXQ7Z333 2677 aaKnown RBP19.54■□□□□ 0.72
CLN3-207ENST00000395653 HEATR5AQ86XA9 2040 aa19.54■□□□□ 0.72
CLN3-207ENST00000395653 GJE1A6NN92 205 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 ADAMDEC1O15204 470 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 EFNA2O43921 213 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 ADAM11O75078 769 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 ZNF311Q5JNZ3 666 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 KRT73Q86Y46 540 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 PTOV1Q86YD1 416 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 POU5F2Q8N7G0 328 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 HIPK4Q8NE63 616 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 PINK1Q9BXM7 581 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 TMEM185BQ9H7F4 350 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 RLIMQ9NVW2 624 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 GID8Q9NWU2 228 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 ZNF629Q9UEG4 869 aaPredicted RBP19.53■□□□□ 0.72
CLN3-207ENST00000395653 KIAA1549Q9HCM3 1950 aa19.53■□□□□ 0.72
CLN3-207ENST00000395653 CFAP73A6NFT4 308 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 SLC22A20A6NK97 555 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 RCBTB2O95199 551 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 COX4I1P13073 169 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 UQCRBP14927 111 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 EIF1AXP47813 144 aaKnown RBP19.52■□□□□ 0.72
CLN3-207ENST00000395653 ZNF136P52737 540 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 PDSS1Q5T2R2 415 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 GRINAQ7Z429 371 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 PIGWQ7Z7B1 504 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 LIX1LQ8IVB5 337 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 OR10D3Q8NH80 312 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 OR2V1Q8NHB1 315 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 ZNF845Q96IR2 970 aaPredicted RBP19.52■□□□□ 0.72
CLN3-207ENST00000395653 SPATA5L1Q9BVQ7 753 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 ANGPT4Q9Y264 503 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 CHST2Q9Y4C5 530 aa19.52■□□□□ 0.72
CLN3-207ENST00000395653 A0A0J9YW62 118 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 FAM90A27PA6NNH2 459 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 AP3D1O14617 1153 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 DVL2O14641 736 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 TGM6O95932 706 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 PRKAR1BP31321 381 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 MERTKQ12866 999 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 EPS8Q12929 822 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 SGCBQ16585 318 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 SLC25A35Q3KQZ1 300 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 OR2A2Q6IF42 318 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 C3orf33Q6P1S2 294 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 PLXDC2Q6UX71 529 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 PLEKHM3Q6ZWE6 761 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 P4HA3Q7Z4N8 544 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 TREML1Q86YW5 311 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 CLIP4Q8N3C7 705 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 OR10A6Q8NH74 314 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 SLC35B4Q969S0 331 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 RCN3Q96D15 328 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 ZNF607Q96SK3 696 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 CHST11Q9NPF2 352 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 KCNJ16Q9NPI9 418 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 TNFSF11O14788 317 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 IL18BPO95998 194 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 OPN1LWP04000 364 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 TMIGD3P0DMS9 266 aaPredicted RBP19.51■□□□□ 0.71
CLN3-207ENST00000395653 CTSSP25774 331 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 SFTPDP35247 375 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 APOBEC1P41238 236 aaKnown RBP19.51■□□□□ 0.71
CLN3-207ENST00000395653 HTR3AP46098 478 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 IDH2P48735 452 aaKnown RBP19.51■□□□□ 0.71
CLN3-207ENST00000395653 PON3Q15166 354 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 RABL3Q5HYI8 236 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 HBMQ6B0K9 141 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 POMZP3Q6PJE2 187 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 ZNF550Q7Z398 422 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 SLC30A8Q8IWU4 369 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 ZZZ3Q8IYH5 903 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 FIG4Q92562 907 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 UCK2Q9BZX2 261 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 SERINC1Q9NRX5 453 aa19.51■□□□□ 0.71
CLN3-207ENST00000395653 FCGR2AP12318 317 aa19.5■□□□□ 0.71
CLN3-207ENST00000395653 GRNP28799 593 aaKnown RBP19.5■□□□□ 0.71
CLN3-207ENST00000395653 SHC1P29353 583 aa19.5■□□□□ 0.71
CLN3-207ENST00000395653 OPRM1P35372 400 aa19.5■□□□□ 0.71
CLN3-207ENST00000395653 GZMMP51124 257 aa19.5■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms