RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 KCNK7Q9Y2U2 307 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 CACNA1HO95180 2353 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 CCDC88CQ9P219 2028 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 EML5Q05BV3 1969 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 LRRC72A6NJI9 287 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 CD8B2A6NJW9 211 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 KDM4EB2RXH2 506 aaPredicted RBP10.34□□□□□ -0.75
CUX1-204ENST00000393824 APBB3O95704 486 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 APOC1P02654 83 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 CEACAM5P06731 702 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 FCER2P06734 321 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 H2AFB1P0C5Y9 115 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 CD8BP10966 210 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 UQCRC2P22695 453 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 CXCL12P48061 93 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 MMP15P51511 669 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 RAB8AP61006 207 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 LTB4RQ15722 352 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 PABPC1L2AQ5JQF8 200 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 SLC22A10Q63ZE4 541 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 FAM71E1Q6IPT2 247 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 B3GLCTQ6Y288 498 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 TMPRSS9Q7Z410 1059 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 ZER1Q7Z7L7 766 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 MAML2Q8IZL2 1156 aaPredicted RBP10.34□□□□□ -0.75
CUX1-204ENST00000393824 SAMD12Q8N8I0 201 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 OR52N1Q8NH53 320 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 WDR34Q96EX3 536 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 DDOQ99489 341 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 RSPO3Q9BXY4 272 aaPredicted RBP10.34□□□□□ -0.75
CUX1-204ENST00000393824 A4GALTQ9NPC4 353 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 NPDC1Q9NQX5 325 aaPredicted RBP10.34□□□□□ -0.75
CUX1-204ENST00000393824 STOX2Q9P2F5 926 aaPredicted RBP10.34□□□□□ -0.75
CUX1-204ENST00000393824 SPATA2Q9UM82 520 aa10.34□□□□□ -0.75
CUX1-204ENST00000393824 A0A1W2PRQ8 180 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 L7N2F9 121 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 PRAF2O60831 178 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 NME6O75414 186 aaPredicted RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 MMP11P24347 488 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 PRKAR1BP31321 381 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 CCR6P51684 374 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 SSTP61278 116 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 NAE1Q13564 534 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 DYRK1AQ13627 763 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 CCSMST1Q4G0I0 132 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ENTPD8Q5MY95 495 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ATRAIDQ6UW56 229 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 NAXDQ8IW45 347 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 TMEM105Q8N8V8 129 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ZNF527Q8NB42 609 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 FBXO15Q8NCQ5 510 aaPredicted RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 TEX47Q8TBZ9 253 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ZFPM2Q8WW38 1151 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 APOOQ9BUR5 198 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ZCCHC4Q9H5U6 513 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 MVB12BQ9H7P6 319 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 KLF15Q9UIH9 416 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 A0A1W2PRB8 838 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ARHGEF33A8MVX0 844 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 MCRIP1C9JLW8 97 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 SIGLEC6O43699 453 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 FZD7O75084 574 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 POP7O75817 140 aaKnown RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 CATP04040 527 aaKnown RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 NFYAP23511 347 aaPredicted RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 RNF144AP50876 292 aaPredicted RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 RPS7P62081 194 aaKnown RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 RPS13P62277 151 aaKnown RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 BDH1Q02338 343 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ZNF542PQ5EBM4 170 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 C1orf94Q6P1W5 598 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 SLCO4C1Q6ZQN7 724 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 C17orf107Q6ZR85 190 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 MCATQ8IVS2 390 aaKnown RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 KLHL36Q8N4N3 616 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 SPICQ8N5J4 248 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 OR13H1Q8NG92 308 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 OR5AK3PQ8NH89 298 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 CCL4L1Q8NHW4 92 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 C16orf78Q8WTQ4 265 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 ELMOD3Q96FG2 381 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 SPRTNQ9H040 489 aaPredicted RBP10.33□□□□□ -0.76
CUX1-204ENST00000393824 NLGN3Q9NZ94 848 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 OR6C2Q9NZP2 312 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 PIPOXQ9P0Z9 390 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 PCOLCE2Q9UKZ9 415 aa10.33□□□□□ -0.76
CUX1-204ENST00000393824 SPAG17Q6Q759 2223 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 TCRBV16S1A1N1A0A5B0 115 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 RGS9O75916 674 aaPredicted RBP10.32□□□□□ -0.76
CUX1-204ENST00000393824 UBL3O95164 117 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 IGHA1P01876 353 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 TFP02787 698 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 ALDOBP05062 364 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 CD3GP09693 182 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 POU3F2P20265 443 aaPredicted RBP10.32□□□□□ -0.76
CUX1-204ENST00000393824 HNRNPA2B1P22626 353 aaKnown RBP10.32□□□□□ -0.76
CUX1-204ENST00000393824 KCNJ5P48544 419 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 KIAA1024LP59773 190 aa10.32□□□□□ -0.76
CUX1-204ENST00000393824 SNTB2Q13425 540 aaKnown RBP10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms