RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 LMAN1LQ9HAT1 526 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 TMEM27Q9HBJ8 222 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 CRLF2Q9HC73 371 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 POT1Q9NUX5 634 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 COPS3Q9UNS2 423 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 LOC105369274A0A096LPK9 316 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 LOC102723532A0A0G2JNH3 316 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 A0A0J9YY10 115 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 SYNDIG1LA6NDD5 238 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 FAM86C2PA6NEL3 165 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 FABP12A6NFH5 140 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 SURF4O15260 269 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 PIP5K1CO60331 668 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 LDB3O75112 727 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 THEGLP0DJG4 465 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 PVRP15151 417 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 GABRA5P31644 462 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 SDC2P34741 201 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 SNRPD2P62316 118 aaKnown RBP8.95□□□□□ -0.98
COL6A3-204ENST00000392003 RPS25P62851 125 aaKnown RBP8.95□□□□□ -0.98
COL6A3-204ENST00000392003 SHC2P98077 582 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 SCN1BQ07699 218 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 DOC2BQ14184 412 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 YIF1BQ5BJH7 314 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 COL13A1Q5TAT6 717 aaPredicted RBP8.95□□□□□ -0.98
COL6A3-204ENST00000392003 ZCCHC12Q6PEW1 402 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 CXXC5Q7LFL8 322 aaKnown RBP8.95□□□□□ -0.98
COL6A3-204ENST00000392003 LAX1Q8IWV1 398 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 TMEFF1Q8IYR6 380 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 OR4N4Q8N0Y3 316 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 CSNK1A1LQ8N752 337 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 OR4Q3Q8NH05 313 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 BARHL1Q9BZE3 327 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 DUSP22Q9NRW4 184 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 CSNK1G3Q9Y6M4 447 aa8.95□□□□□ -0.98
COL6A3-204ENST00000392003 FAM221BA6H8Z2 402 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 CENPXA8MT69 81 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 RCBTB2O95199 551 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 HLA-DPB1P04440 258 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 PTNP21246 168 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 G0S2P27469 103 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF155Q12901 538 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 MANEAQ5SRI9 462 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 NXNL2Q5VZ03 156 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 GDPD3Q7L5L3 318 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 CPOQ8IVL8 374 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 RNF113BQ8IZP6 322 aaKnown RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 OR4F15Q8NGB8 312 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 TRMT61AQ96FX7 289 aaKnown RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 KLHDC7BQ96G42 594 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 WDFY2Q96P53 400 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 TBC1D17Q9HA65 648 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 IL20RAQ9UHF4 553 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 A0A087WV62 115 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 BRINP1O60477 761 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZIC2O95409 532 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 NTN1O95631 604 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 HTR1FP30939 366 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 GABRA3P34903 492 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 EFR3AQ14156 821 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 GALEQ14376 348 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZNHIT3Q15649 155 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF628Q5EBL2 1059 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 MRPL2Q5T653 305 aaKnown RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 FIGNL1Q6PIW4 674 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF761Q86XN6 746 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZFP41Q8N8Y5 198 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 GRPEL2Q8TAA5 225 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 BAHD1Q8TBE0 780 aaPredicted RBP8.94□□□□□ -0.98
COL6A3-204ENST00000392003 TMEM239Q8WW34 195 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 STACQ99469 402 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ARHGAP9Q9BRR9 750 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 DPH1Q9BZG8 443 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ZNF350Q9GZX5 532 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 ABCB9Q9NP78 766 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 IFT46Q9NQC8 304 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 C14orf105Q9NVL8 296 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 MED31Q9Y3C7 131 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 CHST2Q9Y4C5 530 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 HS3ST3A1Q9Y663 406 aa8.94□□□□□ -0.98
COL6A3-204ENST00000392003 A0A1W2PQL4 384 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-204ENST00000392003 B4DGG1 531 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 FGF17O60258 216 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 GKN3PP0CG01 181 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 LIMS3P0CW19 117 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 LIMS4P0CW20 117 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 SAGP10523 405 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-204ENST00000392003 NID1P14543 1247 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 TYRP1P17643 537 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 CELP19835 753 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 GDI2P50395 445 aaKnown RBP8.93□□□□□ -0.98
COL6A3-204ENST00000392003 VSX2P58304 361 aaPredicted RBP8.93□□□□□ -0.98
COL6A3-204ENST00000392003 RPS7P62081 194 aaKnown RBP8.93□□□□□ -0.98
COL6A3-204ENST00000392003 TDGQ13569 410 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 OR1Q1Q15612 314 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 AADACL4Q5VUY2 407 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 RPL13AP3Q6NVV1 102 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 QSOX2Q6ZRP7 698 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 MARCH9Q86YJ5 346 aa8.93□□□□□ -0.98
COL6A3-204ENST00000392003 POGLUT1Q8NBL1 392 aa8.93□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms