RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 IL1F10Q8WWZ1 152 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CDS1Q92903 461 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 RPL36Q9Y3U8 105 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TNFSF11O14788 317 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ZCCHC18P0CG32 403 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 DYRK1AQ13627 763 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PLA1AQ53H76 456 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PAMR1Q6UXH9 720 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 MARCH3Q86UD3 253 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 SLC25A43Q8WUT9 341 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ACOT12Q8WYK0 555 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CCL17Q92583 94 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CCDC28BQ9BUN5 200 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TAS2R1Q9NYW7 299 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 FAM171A2A8MVW0 826 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 YIF1AO95070 293 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 GP1BAP07359 652 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 STSP08842 583 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ATP1B3P54709 279 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 HOXA4Q00056 320 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 C1orf185Q5T7R7 199 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TCTN3Q6NUS6 607 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 DMRT3Q9NQL9 472 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 NRXN3Q9Y4C0 1643 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CBR3O75828 277 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 AKR1C2P52895 323 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 F2RL1P55085 397 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 C4orf46Q504U0 113 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 FAM182AQ5T1J6 154 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PLPP6Q8IY26 295 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 OR10G2Q8NGC3 310 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CHCHD6Q9BRQ6 235 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 SORBS1Q9BX66 1292 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 HAPLN2Q9GZV7 340 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ERVMER34-1Q9H9K5 563 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 MYEF2Q9P2K5 600 aaKnown RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TMEM59LQ9UK28 342 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TP53TG5Q9Y2B4 290 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 A3GALT2U3KPV4 340 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 CACNA1SQ13698 1873 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 TRBV23-1A0A0A0MS06 115 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PKLRP30613 574 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 IST1P53990 364 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ARL16Q0P5N6 197 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 OR7E24Q6IFN5 339 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF551Q7Z340 670 aaPredicted RBP8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 WFDC5Q8TCV5 224 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 BTBD10Q9BSF8 475 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 BCO1Q9HAY6 547 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 PRDM4Q9UKN5 801 aa8.55□□□□□ -1.04
LIMCH1-202ENST00000381753 A0A096LPE4 126 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 A0A0G2JPF8 293 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 A0A1W2PPZ6 126 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 HNRNPCL3B7ZW38 293 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SLC25A17O43808 307 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SNAPC5O75971 98 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 HNRNPCL4P0DMR1 293 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 EPHA1P21709 976 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF836Q6ZNA1 936 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SPRED2Q7Z698 418 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 CARM1Q86X55 608 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 CLVS1Q8IUQ0 354 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 PSMF1Q92530 271 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 KATNBL1Q9H079 304 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 PRAMEF27A3QJZ7 478 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 ANTXRLA6NF34 631 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 C16orf97H3BN30 126 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 CLN3Q13286 438 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 DAG1Q14118 895 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 ASTE1Q2TB18 679 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 LINGO2Q7L985 606 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 TRABD2AQ86V40 505 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SPPL2CQ8IUH8 684 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 CCDC36Q8IYA8 594 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 OR4K15Q8NH41 348 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 UFD1Q92890 307 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 PLK3Q9H4B4 646 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 MOV10Q9HCE1 1003 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SDHAF2Q9NX18 166 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 PTGER4P35408 488 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 EIF2B2P49770 351 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 ABRAXAS1Q6UWZ7 409 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 CENPNQ96H22 339 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 NMUR2Q9GZQ4 415 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 METTL8Q9H825 291 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 ZMIZ1Q9ULJ6 1067 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 LINC01387J3KSC0 135 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 NSA2O95478 260 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 TBXA2RP21731 343 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SOX2P48431 317 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 LILRA6Q6PI73 481 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 OR7A2PQ8NGA2 310 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 M1APQ8TC57 530 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 RRNAD1Q96FB5 475 aaKnown RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 ZNF419Q96HQ0 510 aaPredicted RBP8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 FAM234AQ9H0X4 552 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 SLC26A1Q9H2B4 701 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 RHCGQ9UBD6 479 aa8.54□□□□□ -1.04
LIMCH1-202ENST00000381753 A0A096LPI6 279 aa8.53□□□□□ -1.04
LIMCH1-202ENST00000381753 TMED7-TICAM2A0A0A6YYA0 188 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms