RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 PIGCQ92535 297 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 HAVCR1Q96D42 359 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 TGM7Q96PF1 710 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 PAXXQ9BUH6 204 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SPATA16Q9BXB7 569 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 VCX2Q9H322 139 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 FANCFQ9NPI8 374 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF275Q9NSD4 429 aaPredicted RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 SIGLEC8Q9NYZ4 499 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 IL36GQ9NZH8 169 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 AIPL1Q9NZN9 384 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 ANGPTL2Q9UKU9 493 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CLEC4EQ9ULY5 219 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 CLEC4AQ9UMR7 237 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 NPIPA1Q9UND3 350 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 RPH3ALQ9UNE2 315 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 PDE10AQ9Y233 779 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 MEMO1Q9Y316 297 aa1.51□□□□□ -2.17
VPS13A-206ENST00000376646 DDX49Q9Y6V7 483 aaKnown RBP1.51□□□□□ -2.17
VPS13A-206ENST00000376646 PTCH1Q13635 1447 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 IGLV8-61A0A075B6I0 122 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 IGHV2-70DA0A0C4DH43 119 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 A0A1W2PNV4 684 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PP2D1A8MPX8 630 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF705EA8MWA4 302 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 E7ENQ6 273 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 SULT2B1O00204 365 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 RS1O15537 224 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 N4BP1O75113 896 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 H2BFMP0C1H6 154 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 OR8U8P0C7N1 319 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF44P15621 663 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MGMTP16455 207 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 POLR2EP19388 210 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PRKAR2BP31323 418 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 UGT1A3P35503 534 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 GCKP35557 465 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 OR3A4PP47883 348 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 P2RY1P47900 373 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MEOX2P50222 304 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 RIPK4P57078 832 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MAP2K1Q02750 393 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 BCL2L1Q07817 233 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 IL24Q13007 206 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 SLC25A52Q3SY17 297 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 LRRC23Q53EV4 343 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PAGE2BQ5JRK9 111 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF658Q5TYW1 1059 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 RSBN1Q5VWQ0 802 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 LIPNQ5VXI9 398 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 TPGS2Q68CL5 300 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 TMEM225Q6GV28 225 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF544Q6NX49 715 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CXCL17Q6UXB2 119 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CCDC80Q76M96 950 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 TRPM8Q7Z2W7 1104 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MOB3BQ86TA1 216 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 TPRA1Q86W33 373 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 FBXO16Q8IX29 292 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 UBQLNLQ8IYU4 475 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PRR22Q8IZ63 422 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 OR4D5Q8NGN0 318 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 OR13F1Q8NGS4 319 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 EMG1Q92979 244 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 C7orf34Q96L11 122 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MCHR1Q99705 422 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MAPKAP1Q9BPZ7 522 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CHIAQ9BZP6 476 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 NANSQ9NR45 359 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PIPOXQ9P0Z9 390 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 OR1A1Q9P1Q5 309 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PCSK1NQ9UHG2 260 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MOKQ9UQ07 419 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 SCML2Q9UQR0 700 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 FLVCR1Q9Y5Y0 555 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 SMIM28A0A1B0GU29 152 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CLRN2A0PK11 232 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 VSTM2BA6NLU5 285 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 B4DXG7 233 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF208O43345 1280 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PRKYO43930 277 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 GNA14O95837 355 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PNMTP11086 282 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CD1EP15812 388 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 MMP11P24347 488 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 HOXD10P28358 340 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CD80P33681 288 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PRKXP51817 358 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 EFNA3P52797 238 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 AIF1P55008 147 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 OC90Q02509 493 aaPredicted RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 FGL1Q08830 312 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PRR4Q16378 134 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 TRIM16LQ309B1 348 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 SBK1Q52WX2 424 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 SPATA46Q5T0L3 261 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CENPPQ6IPU0 288 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZSCAN25Q6NSZ9 544 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 TMEM110Q86TL2 294 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 APOBEC3FQ8IUX4 373 aaKnown RBP1.5□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms