RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 E7ESA3 106 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 CBR1P16152 277 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 TNFSF4P23510 183 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 MELKQ14680 651 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 TMPRSS7Q7RTY8 843 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 FAM160A2Q8N612 972 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 CDRT4Q8N9R6 151 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 OR5D14Q8NGL3 314 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 HCAR1Q9BXC0 346 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 KCNJ16Q9NPI9 418 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 ZDHHC7Q9NXF8 308 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 INTS6Q9UL03 887 aaKnown RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 A0A087WUU8 490 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 ZCWPW2A0A1B0GU75 182 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 EFCAB7A8K855 629 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 SNNO75324 88 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 SYPL1Q16563 259 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF578Q96N58 590 aaPredicted RBP12.85□□□□□ -0.35
COL4A1-201ENST00000375820 ANKRD10Q9NXR5 420 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 COPS3Q9UNS2 423 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 USP22Q9UPT9 525 aa12.85□□□□□ -0.35
COL4A1-201ENST00000375820 PRKRAO75569 313 aaKnown RBP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 DEFB103AP81534 67 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 TNK1Q13470 666 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 C18orf63Q68DL7 685 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 TSSK4Q6SA08 328 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 SBSNQ6UWP8 590 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 RELL1Q8IUW5 271 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 BIRC8Q96P09 236 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 HEBP1Q9NRV9 189 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 MKS1Q9NXB0 559 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 H3BNC9 293 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 OIP5O43482 229 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 METTL11BQ5VVY1 283 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 C3P1Q6ZMU1 363 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 ZBTB8AQ96BR9 441 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 OR51J1Q9H342 316 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 KLHL42Q9P2K6 505 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 HEMK1Q9Y5R4 338 aaPredicted RBP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 PTGER4P35408 488 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 VEGFCP49767 419 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 RPL23AP62750 156 aaKnown RBP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 OR1Q1Q15612 314 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 TMEM64Q6YI46 380 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 TPRA1Q86W33 373 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 C3orf30Q96M34 536 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 OPA3Q9H6K4 179 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 ELOVL3Q9HB03 270 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 NOX3Q9HBY0 568 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 TMEM269A0A1B0GVZ9 245 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 PRSS38A1L453 326 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF487B1APH4 448 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 MED6O75586 246 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 OR2G6Q5TZ20 316 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 PARS2Q7L3T8 475 aaKnown RBP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 PDZD3Q86UT5 571 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 ADAMTS18Q8TE60 1221 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 ULBP3Q9BZM4 244 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 NUBP2Q9Y5Y2 271 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 SNAPC5O75971 98 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 HBQ1P09105 142 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 HSD17B1P14061 328 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 SIRPAP78324 504 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 APOOLQ6UXV4 268 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 OR13C2Q8NGS9 318 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 ADAMTS16Q8TE57 1224 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 SNAPC3Q92966 411 aa12.84□□□□□ -0.35
COL4A1-201ENST00000375820 PUS1Q9Y606 427 aaKnown RBP eCLIP12.84□□□□□ -0.35
COL4A1-201ENST00000375820 C10orf71Q711Q0 1435 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 B4DXG7 233 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 SURF4O15260 269 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 ZNF865P0CJ78 1059 aaPredicted RBP12.83□□□□□ -0.35
COL4A1-201ENST00000375820 PCGF2P35227 344 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 IDUAP35475 653 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 EFNA3P52797 238 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 SORDQ00796 357 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 HABP2Q14520 560 aaPredicted RBP12.83□□□□□ -0.35
COL4A1-201ENST00000375820 RAB41Q5JT25 222 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 ZC3HAV1LQ96H79 300 aaKnown RBP12.83□□□□□ -0.35
COL4A1-201ENST00000375820 EGLN2Q96KS0 407 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 LRIT1Q9P2V4 623 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 BTNL2Q9UIR0 455 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 CBLCQ9ULV8 474 aa12.83□□□□□ -0.35
COL4A1-201ENST00000375820 WASH4PA8MWX3 477 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 TRAPPC2LH3BP13 241 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 HLA-AP01891 365 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 GM2AP17900 193 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 C21orf33P30042 268 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 CAMK2DQ13557 499 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SMN1Q16637 294 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SHEQ5VZ18 495 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 PLAG1Q6DJT9 500 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 ZNF322Q6U7Q0 402 aaPredicted RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 SCD5Q86SK9 330 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 DAZAP1Q96EP5 407 aaKnown RBP12.83□□□□□ -0.36
COL4A1-201ENST00000375820 OR52D1Q9H346 318 aa12.83□□□□□ -0.36
COL4A1-201ENST00000375820 CUTCQ9NTM9 273 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 99.8 ms