RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 SLC46A1Q96NT5 459 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CCM2Q9BSQ5 444 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 VAMP8Q9BV40 100 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NMNAT2Q9BZQ4 307 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NPFFR1Q9GZQ6 430 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SPATC1LQ9H0A9 340 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 MSL2Q9HCI7 577 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 KCNK6Q9Y257 313 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TIMM22Q9Y584 194 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CABIN1Q9Y6J0 2220 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 HEG1Q9ULI3 1381 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OTOFQ9HC10 1997 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 IGHV3-64DA0A0J9YX35 117 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 A0A0J9YYE9 177 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1B0GTQ1 180 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1W2PQH9 124 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SSU72P8A0A1W2PR75 194 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 A0A1W2PRU2 124 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ADM5C9JUS6 153 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 F8VP50 259 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SOCS6O14544 535 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 BCAT2O15382 392 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TCTAP57738 103 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 RPS16P62249 146 aaKnown RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 GLO1Q04760 184 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NDUFAF5Q5TEU4 345 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 FDX2Q6P4F2 183 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 WDR73Q6P4I2 378 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 LRRTM1Q86UE6 522 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF761Q86XN6 746 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PLXDC1Q8IUK5 500 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SLC26A10Q8NG04 563 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 IGDCC4Q8TDY8 1250 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SAMD8Q96LT4 415 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CNTNAP3BQ96NU0 1288 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR5M11Q96RB7 305 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NEURL2Q9BR09 285 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NUDT22Q9BRQ3 303 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 LRRC3Q9BY71 257 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 IL25Q9H293 177 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CWH43Q9H720 699 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 GAR1Q9NY12 217 aaKnown RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PRELID3BQ9Y3B1 194 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 LOC102725191A0A1B0GVB3 256 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TSPAN11A1L157 253 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 HSD17B6O14756 317 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ATXN7O15265 892 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PPIHO43447 177 aaKnown RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PI15O43692 258 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 LIASO43766 372 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 IGKV5-2P06315 115 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SMIM6P0DI80 62 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SHMT1P34896 483 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 BCL6P41182 706 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PTCH1Q13635 1447 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF74Q16587 644 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CPEB4Q17RY0 729 aaKnown RBP eCLIP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR8G2PQ6IF36 304 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SYT13Q7L8C5 426 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 VSIG10LQ86VR7 867 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 MKXQ8IYA7 352 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM86AQ8N2M4 240 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 LINC01599Q8WXQ3 324 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ZPBPQ9BS86 351 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR10A5Q9H207 317 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR10A2Q9H208 303 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR51I1Q9H343 314 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 C11orf49Q9H6J7 331 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CLK4Q9HAZ1 481 aaKnown RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CEPT1Q9Y6K0 416 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TRAV20A0A0B4J274 112 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 M0R1B8 84 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 IRAK2O43187 625 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 CER1O95813 267 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 IL5P05113 134 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PROS1P07225 676 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SLC35A1P78382 337 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 MAB21L1Q13394 359 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 COQ5Q5HYK3 327 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SAMD13Q5VXD3 122 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SPATA19Q7Z5L4 167 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 DEFB108BQ8NET1 73 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR2T33Q8NG76 320 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SLC35E1Q96K37 410 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 G6PC3Q9BUM1 346 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TMEM109Q9BVC6 243 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 DPH1Q9BZG8 443 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PORCNQ9H237 461 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TUBA8Q9NY65 449 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TAS2R8Q9NYW2 309 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TAC3Q9UHF0 121 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 HES2Q9Y543 173 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 ZFP37Q9Y6Q3 630 aaPredicted RBP4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RFX7Q2KHR2 1363 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 OR5K3A6NET4 321 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 TO15178 435 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 PCDH7O60245 1069 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 SOX14O95416 240 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 RBP4P02753 201 aa4.37□□□□□ -1.71
SCN1A-202ENST00000375405 FECHP22830 423 aa4.37□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms