RNA–Protein interactions for RNA: ENST00000374876.4

CCDC40-202, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best) BASIC

Gene CCDC40, Length 2,010 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-202ENST00000374876 TMEM203Q969S6 136 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 NXPE2Q96DL1 559 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 BARHL1Q9BZE3 327 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 PDE7BQ9NP56 450 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 DUSP22Q9NRW4 184 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 MED17Q9NVC6 651 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 TXNL4BQ9NX01 149 aaKnown RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 SIDT1Q9NXL6 827 aaKnown RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 CAB39Q9Y376 341 aaPredicted RBP14.34□□□□□ -0.11
CCDC40-202ENST00000374876 CDH10Q9Y6N8 788 aa14.34□□□□□ -0.11
CCDC40-202ENST00000374876 TRAPPC13A5PLN9 417 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 CYR61O00622 381 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 GALR3O60755 368 aaPredicted RBP14.33□□□□□ -0.12
CCDC40-202ENST00000374876 SNX4O95219 450 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 PTTG1O95997 202 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 TNFSF8P32971 234 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 ZNF136P52737 540 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 DEFA1P59665 94 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 DEFA3P59666 94 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 MC2RQ01718 297 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 KRR1Q13601 381 aaKnown RBP14.33□□□□□ -0.12
CCDC40-202ENST00000374876 MAPK14Q16539 360 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 KMT5CQ86Y97 462 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 POGLUT1Q8NBL1 392 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 RNF217Q8TC41 542 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 ITPKCQ96DU7 683 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 STACQ99469 402 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 TPK1Q9H3S4 243 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 RERGLQ9H628 205 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 ASCL3Q9NQ33 180 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 IL20RAQ9UHF4 553 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 B3GALT1Q9Y5Z6 326 aa14.33□□□□□ -0.12
CCDC40-202ENST00000374876 C9orf172C9J069 976 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 POLR1CO15160 346 aaPredicted RBP14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CDRT1O95170 752 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 NID1P14543 1247 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 PTNP21246 168 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 MLLT3P42568 568 aaPredicted RBP14.32□□□□□ -0.12
CCDC40-202ENST00000374876 FOXK2Q01167 660 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 MXD1Q05195 221 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 EXOSC7Q15024 291 aaKnown RBP14.32□□□□□ -0.12
CCDC40-202ENST00000374876 DEFB110Q30KQ9 67 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 FLYWCH1Q4VC44 716 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 MRPL2Q5T653 305 aaKnown RBP14.32□□□□□ -0.12
CCDC40-202ENST00000374876 AADACL4Q5VUY2 407 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 C22orf42Q6IC83 251 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 ZCCHC12Q6PEW1 402 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 SHISA5Q8N114 240 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CARFQ8N187 725 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CA13Q8N1Q1 262 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 UFD1Q92890 307 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 TAAR9Q96RI9 348 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 ISYNA1Q9NPH2 558 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 FGF21Q9NSA1 209 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 STARD5Q9NSY2 213 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 FOXJ2Q9P0K8 574 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 SPTBP11277 2137 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 B4E171 279 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 PEX12O00623 359 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CDC42EP2O14613 210 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 HMGN1P05114 100 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CTSBP07858 339 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 GKN3PP0CG01 181 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 PRG2P13727 222 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 RPS4Y1P22090 263 aaKnown RBP14.32□□□□□ -0.12
CCDC40-202ENST00000374876 TSPAN7P41732 249 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 GCGRP47871 477 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 TPBGQ13641 420 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 PRICKLE4Q2TBC4 344 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 FIGNL1Q6PIW4 674 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CLDN22Q8N7P3 220 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 TM9SF4Q92544 642 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 C1GALT1C1Q96EU7 318 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 TCTN2Q96GX1 697 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 SAMD8Q96LT4 415 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CCDC32Q9BV29 185 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 FBXO34Q9NWN3 711 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 MAT2BQ9NZL9 334 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 H2AFY2Q9P0M6 372 aaPredicted RBP14.32□□□□□ -0.12
CCDC40-202ENST00000374876 ADAMTS20P59510 1910 aa14.32□□□□□ -0.12
CCDC40-202ENST00000374876 CHD8Q9HCK8 2581 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 SGK494L7N484 410 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 AK1P00568 194 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 IL1AP01583 271 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 LIMS3P0CW19 117 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 LIMS4P0CW20 117 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 HTR2AP28223 471 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 GABRA3P34903 492 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 ATP6V1E1P36543 226 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 SLC1A3P43003 542 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 RNF144AP50876 292 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-202ENST00000374876 COPZ1P61923 177 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 POU6F2P78424 691 aaPredicted RBP14.31□□□□□ -0.12
CCDC40-202ENST00000374876 OR1Q1Q15612 314 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 EXOSC6Q5RKV6 272 aaKnown RBP14.31□□□□□ -0.12
CCDC40-202ENST00000374876 DCAF12Q5T6F0 453 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 PRAMEF17Q5VTA0 474 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 UNQ6494/PRO21346Q6UXR6 183 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 HSDL2Q6YN16 418 aa14.31□□□□□ -0.12
CCDC40-202ENST00000374876 LHFPL3Q86UP9 236 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms