RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 GALR3O60755 368 aaPredicted RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 PTNP21246 168 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 E2F1Q01094 437 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 MRPL28Q13084 256 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 CRMP1Q14194 572 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 GPR18Q14330 331 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 FIGNL1Q6PIW4 674 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ABI3BPQ7Z7G0 1075 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 GLCCI1Q86VQ1 547 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 OR4N4Q8N0Y3 316 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 CA13Q8N1Q1 262 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 SYS1Q8N2H4 156 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 SIPA1Q96FS4 1042 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 C4orf36Q96KX1 117 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 PGLYRP3Q96LB9 341 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 TMEM168Q9H0V1 697 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 SLC6A17Q9H1V8 727 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 RABL2AQ9UBK7 228 aaPredicted RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 RABL2BQ9UNT1 228 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 MDC1Q14676 2089 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 NPIPA5A0A0B4J1W7 369 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 A0A0J9YY10 115 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 A0A1B0GWA3 101 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 GXYLT2A0PJZ3 443 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ZNF860A6NHJ4 632 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 A6NL46 340 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 NPIPA7E9PJI5 369 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 J3QLW9 94 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 OGG1O15527 345 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 LDB3O75112 727 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 RASGRP1O95267 797 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 SLC35E2P0CK97 266 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 NPIPA8P0DM63 369 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 HOXB2P14652 356 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 IL9P15248 144 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ZNF19P17023 458 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 HNRNPA2B1P22626 353 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 AHCYP23526 432 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 SLC16A1P53985 500 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 RAB38P57729 211 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 YPEL5P62699 121 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ACTA2P62736 377 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ACTG2P63267 376 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 PLAURQ03405 335 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 SLC3A1Q07837 685 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 GGTLC2Q14390 218 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ACSM3Q53FZ2 586 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 HSD17B12Q53GQ0 312 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 Q5BKY6 102 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 PARM1Q6UWI2 310 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 RD3Q7Z3Z2 195 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 LSMEM1Q8N8F7 131 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 POMGNT2Q8NAT1 580 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 OR10G6Q8NH81 332 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 CCL4L1Q8NHW4 92 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 TRMT10AQ8TBZ6 339 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 TSACCQ96A04 125 aaPredicted RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 MRPL48Q96GC5 212 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 BMFQ96LC9 184 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 YIPF2Q9BWQ6 316 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 PPIL3Q9H2H8 161 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 TMEM74BQ9NUR3 256 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 POT1Q9NUX5 634 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 MCUBQ9NWR8 336 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ABRACLQ9P1F3 81 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 ST6GALNAC2Q9UJ37 374 aa13.2□□□□□ -0.3
CD48-201ENST00000368045 MRPS2Q9Y399 296 aaKnown RBP13.2□□□□□ -0.3
CD48-201ENST00000368045 TRBV23OR9-2A0A075B6M9 112 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 TRAV27A0A087WT01 109 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 ARL6IP5O75915 188 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 PPP1R3DO95685 299 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 DHFRP00374 187 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 RAB3BP20337 219 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 COL9A1P20849 921 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 NOS3P29474 1203 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 GNG2P59768 71 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 SRP54P61011 504 aaKnown RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 PITPNAQ00169 270 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 COL9A2Q14055 689 aaPredicted RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 EXOSC7Q15024 291 aaKnown RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 ZNHIT3Q15649 155 aaPredicted RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 FAAH2Q6GMR7 532 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 CREB3L2Q70SY1 520 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 CSNK1A1LQ8N752 337 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 TMEM52Q8NDY8 209 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 OR51A7Q8NH64 312 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 FAM3CQ92520 227 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 PHYHIPQ92561 330 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 CNOT9Q92600 299 aaKnown RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 C7orf50Q9BRJ6 194 aaKnown RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 LMF2Q9BU23 707 aaKnown RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 NDEL1Q9GZM8 345 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 ABCG5Q9H222 651 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 ZCCHC4Q9H5U6 513 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 MCCC2Q9HCC0 563 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.19□□□□□ -0.3
CD48-201ENST00000368045 FLRT3Q9NZU0 649 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 COPZ2Q9P299 210 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 CACNG2Q9Y698 323 aa13.19□□□□□ -0.3
CD48-201ENST00000368045 SNRNP200O75643 2136 aaKnown RBP13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms