RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 RPE65Q16518 533 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 PRAMEF20Q5VT98 475 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 LIPJQ5W064 366 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CDCA2Q69YH5 1023 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 SP5Q6BEB4 398 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 PLEKHA7Q6IQ23 1121 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 UNC5AQ6ZN44 842 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SPACA3Q8IXA5 215 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NPEPL1Q8NDH3 523 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR2Y1Q8NGV0 311 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 VANGL1Q8TAA9 524 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC6A7Q99884 636 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SOX7Q9BT81 388 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 KLF16Q9BXK1 252 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 ELOVL5Q9NYP7 299 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ABCD2Q9UBJ2 740 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC23A1Q9UHI7 598 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SPATA2Q9UM82 520 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 FADS3Q9Y5Q0 445 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 FAM186AA6NE01 2351 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TMEM150BA6NC51 233 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MROH6A6NGR9 719 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NPIPA7E9PJI5 369 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 P2RY10O00398 339 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 MRASO14807 208 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NDUFA2O43678 99 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ARL6IP5O75915 188 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 UBL3O95164 117 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 GPR75O95800 540 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 C6orf47O95873 294 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TGFB1P01137 390 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 THY1P04216 161 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NPIPA8P0DM63 369 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TMEM225BP0DP42 221 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC2A1P11166 492 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 AK4P27144 223 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 CDK9P50750 372 aaKnown RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 PGGT1BP53609 377 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SOX8P57073 446 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 KLF3P57682 345 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 TRA2BP62995 288 aaKnown RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 PLAURQ03405 335 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 FASTKQ14296 549 aaKnown RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 PPA1Q15181 289 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CHI3L2Q15782 390 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 RTL8BQ17RB0 113 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZNF704Q6ZNC4 412 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 RNF130Q86XS8 419 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 YIPF7Q8N8F6 280 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CCDC71LQ8N9Z2 235 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NUP43Q8NFH3 380 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR5M9Q8NGP3 310 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 TMIGD2Q96BF3 282 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SHISA4Q96DD7 197 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ERGIC2Q96RQ1 377 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SPIN2AQ99865 258 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SPIN2BQ9BPZ2 258 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ZBTB26Q9HCK0 441 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 F5P12259 2224 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TEX13DA0A0J9YY54 714 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 FAM181BA6NEQ2 426 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 HS3ST1O14792 307 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SERPINA6P08185 405 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 RAB40ALP0C0E4 278 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 THRBP10828 461 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CTSSP25774 331 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GIFP27352 417 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 C21orf33P30042 268 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 COILP38432 576 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 AP2S1P53680 142 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 SLC10A7Q0GE19 358 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 LCP2Q13094 533 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 VMA21Q3ZAQ7 101 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 LETMD1Q6P1Q0 360 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 FAHD1Q6P587 224 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GDPGP1Q6ZNW5 385 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 KLHDC8AQ8IYD2 350 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ZNF619Q8N2I2 560 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 JAGN1Q8N5M9 183 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ZNF433Q8N7K0 673 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 OR2L2Q8NH16 312 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 THEM6Q8WUY1 208 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CAVIN3Q969G5 261 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TRIM63Q969Q1 353 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ELP4Q96EB1 424 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SMOQ99835 787 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 B3GNT4Q9C0J1 378 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GAL3ST2Q9H3Q3 398 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 SMOC1Q9H4F8 434 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 ETNK1Q9HBU6 452 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GPN1Q9HCN4 374 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 DUOX1Q9NRD9 1551 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 TNFRSF19Q9NS68 423 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 CHST7Q9NS84 486 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 DOPEY2Q9Y3R5 2298 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 NME7Q9Y5B8 376 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 NCBP2LA6PVI3 153 aaKnown RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 EFSO43281 561 aa3.8□□□□□ -1.8
USH2A-202ENST00000366942 GSTZ1O43708 216 aaPredicted RBP3.8□□□□□ -1.8
USH2A-202ENST00000366942 PRAMEF10O60809 474 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms