RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 GID4Q8IVV7 300 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 OMA1Q96E52 524 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 CCDC120Q96HB5 630 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 SLC25A18Q9H1K4 315 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 DPAGT1Q9H3H5 408 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 CYSLTR2Q9NS75 346 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 EIF3KQ9UBQ5 218 aaKnown RBP11.25□□□□□ -0.61
CLIP3-201ENST00000360535 FLVCR2Q9UPI3 526 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 TMEM5Q9Y2B1 443 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 PRUNE2Q8WUY3 3088 aa11.25□□□□□ -0.61
CLIP3-201ENST00000360535 POM121BA6NF01 834 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 P2RX6O15547 441 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 CDC123O75794 336 aaPredicted RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 SLC35G6P0C7Q6 338 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 RAB3BP20337 219 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 F8A1P23610 371 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 SLC6A1P30531 599 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 MTNR1BP49286 362 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 ZNF81P51508 661 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 RPL6Q02878 288 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 TRILQ7L0X0 811 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 LUZP2Q86TE4 346 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 ASPGQ86U10 573 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 CREB3L1Q96BA8 519 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 MOAP1Q96BY2 351 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 ERMAPQ96PL5 475 aaPredicted RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 PRSS27Q9BQR3 290 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 TEX101Q9BY14 249 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 AUNIPQ9H7T9 357 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 NIPAL2Q9H841 368 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 GNG8Q9UK08 70 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 MRPS2Q9Y399 296 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 TRIOO75962 3097 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 A0A1B0GVT2 93 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 SGK494L7N484 410 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 TCRBP04435 133 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 GJA4P35212 333 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 ACTR1BP42025 376 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 VSX2P58304 361 aaPredicted RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 ACTR1AP61163 376 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 SUZ12Q15022 739 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 DCST2Q5T1A1 773 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 HES5Q5TA89 166 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 PIAS4Q8N2W9 510 aaPredicted RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 OR11H4Q8NGC9 324 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 OR6K6Q8NGW6 343 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 HSD17B8Q92506 261 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 SMARCD2Q92925 531 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 ZC3HAV1LQ96H79 300 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 HYLS1Q96M11 299 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 TIMP4Q99727 224 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 HDAC8Q9BY41 377 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 KCNE5Q9UJ90 142 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 MED31Q9Y3C7 131 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 CIB4A0PJX0 185 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 OR2W5A6NFC9 320 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 GRXCR1A8MXD5 290 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 GMFGO60234 142 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 HLA-DQB1P01920 261 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 IL9P15248 144 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 CRYZQ08257 329 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 GALEQ14376 348 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 TMEM44Q2T9K0 475 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 LINGO2Q7L985 606 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 FRMD1Q8N878 549 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 CNOT9Q92600 299 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 RAB7BQ96AH8 199 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 OR14A2Q96R54 314 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 GTPBP2Q9BX10 602 aaKnown RBP11.24□□□□□ -0.61
CLIP3-201ENST00000360535 SLC17A9Q9BYT1 436 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 OR51J1Q9H342 316 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 IL21RQ9HBE5 538 aa11.24□□□□□ -0.61
CLIP3-201ENST00000360535 MPDZO75970 2070 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 IDSB3KWA1 339 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 RASGRP1O95267 797 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 SBK2P0C263 348 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 CPMP14384 443 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 ATF1P18846 271 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 TLX1P31314 330 aaPredicted RBP11.23□□□□□ -0.61
CLIP3-201ENST00000360535 RPL4P36578 427 aaKnown RBP11.23□□□□□ -0.61
CLIP3-201ENST00000360535 SHC2P98077 582 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 TNK1Q13470 666 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 FAM109AQ8N4B1 249 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 MFSD9Q8NBP5 474 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 SNX33Q8WV41 574 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 PATE1Q8WXA2 126 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 ACOT12Q8WYK0 555 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 MAP6Q96JE9 813 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 KXD1Q9BQD3 176 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 ZMIZ1Q9ULJ6 1067 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 I3L521 148 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 BHLHE40O14503 412 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 CTSVO60911 334 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 STX11O75558 287 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 RPP14O95059 124 aaKnown RBP11.23□□□□□ -0.61
CLIP3-201ENST00000360535 ODF4Q2M2E3 257 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 NDUFAF6Q330K2 333 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 PRRT3Q5FWE3 981 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 FAAP20Q6NZ36 180 aa11.23□□□□□ -0.61
CLIP3-201ENST00000360535 SFTPA2Q8IWL1 248 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms