RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 TRMUO75648 421 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 BAG2O95816 211 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CLPTM1O96005 669 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KRT6AP02538 564 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 STATHP02808 62 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KRT6BP04259 564 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FCGR1AP12314 374 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GYPEP15421 78 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ST6GAL1P15907 406 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 DRD1P21728 446 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BCKDHBP21953 392 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GATA3P23771 443 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SERPINB1P30740 379 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 HOXA6P31267 233 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 UQCRC1P31930 480 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ETV5P41161 510 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 GPR1P46091 355 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KRT6CP48668 564 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ENTPD1P49961 510 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MEOX1P50221 254 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 ETV1P50549 477 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 UGT2B15P54855 530 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SRP54P61011 504 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 YPEL5P62699 121 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PLIN5Q00G26 463 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 IRF8Q02556 426 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LRRC74AQ0VAA2 488 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MRPL49Q13405 166 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 ZNF141Q15928 474 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CCDC6Q16204 474 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 KLHL26Q53HC5 615 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CPTPQ5TA50 214 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 LINC01590Q5TEZ4 76 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 B3GNTL1Q67FW5 361 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 PODNL1Q6PEZ8 512 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TRIM73Q86UV7 250 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MOGAT3Q86VF5 341 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 VRK2Q86Y07 508 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CLDN22Q8N7P3 220 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SLC16A11Q8NCK7 471 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 BBS1Q8NFJ9 593 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 B3GNT7Q8NFL0 401 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR4N2Q8NGD1 307 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR4A15Q8NGL6 344 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR9A2Q8NGT5 310 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR8K5Q8NH50 307 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SLC37A2Q8TED4 501 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CHPT1Q8WUD6 406 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RGP1Q92546 391 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 TSACCQ96A04 125 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 TMEM41AQ96HV5 264 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 NSMCE2Q96MF7 247 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 TRNT1Q96Q11 434 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 SDF2Q99470 211 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MS4A7Q9GZW8 240 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 OR51I1Q9H343 314 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 WDR26Q9H7D7 661 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 MARCH7Q9H992 704 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FANCEQ9HB96 536 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 SLC35C2Q9NQQ7 365 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 PAPOLBQ9NRJ5 636 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 TRNAU1APQ9NX07 287 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 NDUFB11Q9NX14 153 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CHRNA9Q9UGM1 479 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 RSL24D1Q9UHA3 163 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 SERTAD3Q9UJW9 196 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 FBXW2Q9UKT8 454 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 C19orf53Q9UNZ5 99 aaPredicted RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 B3GNT3Q9Y2A9 372 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 CACNA1GO43497 2377 aa2.11□□□□□ -2.07
VPS54-202ENST00000354504 UTP20O75691 2785 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 ASCC3Q8N3C0 2202 aaKnown RBP2.11□□□□□ -2.07
VPS54-202ENST00000354504 A0A0B4J2E0 115 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 A0A1B0GX12 115 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 AGAP5A6NIR3 686 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 AHRRA9YTQ3 701 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 SYT5O00445 386 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 KPNA3O00505 521 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 PEX12O00623 359 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CLGNO14967 610 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 LDLRP01130 860 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 HMGN2P05204 90 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 DBTP11182 482 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 ACP5P13686 325 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FOSL2P15408 326 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF182P17025 639 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 NDUFS1P28331 727 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PRKAR1BP31321 381 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 FMO3P31513 532 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 S100A3P33764 101 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 OPRL1P41146 370 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TGM4P49221 684 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CCR8P51685 355 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 AFF3P51826 1226 aaKnown RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 SLC37A1P57057 533 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 CDK6Q00534 326 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 PRKCDQ05655 676 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 TSTA3Q13630 321 aaPredicted RBP2.1□□□□□ -2.07
VPS54-202ENST00000354504 INSL4Q14641 139 aa2.1□□□□□ -2.07
VPS54-202ENST00000354504 ZNF630Q2M218 657 aaPredicted RBP2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 81.7 ms