RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 HBA1P69905 142 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 MPPED2Q15777 294 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 PARGQ86W56 976 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 FAM213BQ8TBF2 198 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF596Q8TC21 504 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ANKRD9Q96BM1 317 aaPredicted RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 DIDO1Q9BTC0 2240 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 UBR2Q8IWV8 1755 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 TMEM218A2RU14 115 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF207O43670 478 aaKnown RBP11.88□□□□□ -0.51
COL6A3-203ENST00000353578 CXADRP78310 365 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 ACSM3Q53FZ2 586 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 GABARAPL1Q9H0R8 117 aa11.88□□□□□ -0.51
COL6A3-203ENST00000353578 A0A1B0GVT2 93 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 C1orf226A1L170 272 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 ANKRD66B4E2M5 251 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 MAS1P04201 325 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 GM2AP17900 193 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 CASP9P55211 416 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 B3GNT9Q6UX72 402 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 TTPALQ9BTX7 342 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 NDUFS4O43181 175 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 PRDX3P30048 256 aaKnown RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 C1QTNF2Q9BXJ5 285 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SRMSQ9H3Y6 488 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SLC39A9Q9NUM3 307 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 RCE1Q9Y256 329 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SMIM18P0DKX4 95 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 CPOXP36551 454 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SMAD3P84022 425 aaKnown RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 LTBQ06643 244 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF154Q13106 437 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 MAMDC2Q7Z304 686 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SLC30A3Q99726 388 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 A6NDN8 102 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 H2AFB1P0C5Y9 115 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 ANXA7P20073 488 aaKnown RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 NKX1-1Q15270 411 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 WFIKKN2Q8TEU8 576 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 WDR18Q9BV38 432 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 BCO2Q9BYV7 579 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 MRPL17Q9NRX2 175 aaKnown RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SPATA31A1Q5TZJ5 1347 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 MRC1P22897 1456 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 C6P13671 934 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 B3GNTL1Q67FW5 361 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 RRAGCQ9HB90 399 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 ARRDC5A6NEK1 342 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 HOXC11O43248 304 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 BCL2L11O43521 198 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 GJA5P36382 358 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 CLDN6P56747 220 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 CNN3Q15417 329 aaKnown RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 AGBL4Q5VU57 503 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 AGTRAPQ6RW13 159 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 CPNE4Q96A23 557 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 C1orf74Q96LT6 269 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 ZNF318Q5VUA4 2279 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 KIDINS220Q9ULH0 1771 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 NUP98P52948 1817 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 NEMP2A6NFY4 417 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 B4DEV8 164 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 M0R2N6 131 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SURF4O15260 269 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 RASD2Q96D21 266 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 SYT17Q9BSW7 474 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 GALPQ9UBC7 116 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 CA12O43570 354 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 KCNK5O95279 499 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 TCTAP57738 103 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 MTHFD2LQ9H903 347 aaPredicted RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 NMUR1Q9HB89 426 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 ABT1Q9ULW3 272 aaKnown RBP11.87□□□□□ -0.51
COL6A3-203ENST00000353578 DNAJC15Q9Y5T4 150 aa11.87□□□□□ -0.51
COL6A3-203ENST00000353578 PHOX2AO14813 284 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 ERI3O43414 337 aaKnown RBP11.86□□□□□ -0.51
COL6A3-203ENST00000353578 ADAM5Q6NVV9 412 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 OR4K14Q8NGD5 310 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 MVB12BQ9H7P6 319 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 HHLA2Q9UM44 414 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 CACNA1DQ01668 2161 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 TISP43B9A030 160 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 NIPSNAP2O75323 286 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 SSTR4P31391 388 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 PTTG1IPP53801 180 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 NSUN3Q9H649 340 aaKnown RBP11.86□□□□□ -0.51
COL6A3-203ENST00000353578 SLC27A5Q9Y2P5 690 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 PIK3C2AO00443 1686 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 I6L893 689 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-203ENST00000353578 TRHRP34981 398 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-203ENST00000353578 SELENOVP59797 346 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 ACY1Q03154 408 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 PNRC1Q12796 327 aaPredicted RBP11.86□□□□□ -0.51
COL6A3-203ENST00000353578 GRIK5Q16478 980 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 OR5AK3PQ8NH89 298 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 SMPDL3BQ92485 455 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 TEPSINQ96N21 525 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 GAB2Q9UQC2 676 aa11.86□□□□□ -0.51
COL6A3-203ENST00000353578 TIAM2Q8IVF5 1701 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms