RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 SERGEFQ9UGK8 458 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 SCN1AP35498 2009 aa13.87□□□□□ -0.19
COL17A1-201ENST00000353479 TRAV6A0A075B6T7 132 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 GNAO1P09471 354 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CISD3P0C7P0 127 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 PSMB10P40306 273 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 S100A10P60903 97 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF45Q02386 682 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 SQSTM1Q13501 440 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 LRRC37AA6NMS7 1700 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ABOP16442 354 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CD97P48960 835 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CCL11P51671 97 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 POLR2HP52434 150 aaKnown RBP13.86□□□□□ -0.19
COL17A1-201ENST00000353479 RSU1Q15404 277 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM215Q68D42 235 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 TBPL2Q6SJ96 375 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 OR7G1Q8NGA0 311 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ENKD1Q9H0I2 346 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 A4GALTQ9NPC4 353 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 C14orf119Q9NWQ9 140 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 PARPBPQ9NWS1 579 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ST14Q9Y5Y6 855 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CENPBD1B2RD01 187 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 B4GAT1O43505 415 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 GASTP01350 101 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM225BP0DP42 221 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 MYF5P13349 255 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF35P13682 527 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CAPZBP47756 277 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 HSD17B7P56937 341 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 PRSS36Q5K4E3 855 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ESX1Q8N693 406 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 TFAP2CQ92754 450 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 SGPP1Q9BX95 441 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF442Q9H7R0 627 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 IRF2P14316 349 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CXCR4P61073 352 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CD83Q01151 205 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 TRMT12Q53H54 448 aaKnown RBP13.86□□□□□ -0.19
COL17A1-201ENST00000353479 C9orf135Q5VTT2 229 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 AWAT2Q6E213 333 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 CCDC120Q96HB5 630 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 EMC3Q9P0I2 261 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 POLHQ9Y253 713 aa13.86□□□□□ -0.19
COL17A1-201ENST00000353479 A0A1W2PR48 441 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 PRH1P02810 166 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 B4GALNT1Q00973 533 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 HES5Q5TA89 166 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 Q7L0L9 218 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 PLCZ1Q86YW0 608 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ETFBKMTQ8IXQ9 262 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF615Q8N8J6 731 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 SLC37A3Q8NCC5 494 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM163Q8TC26 289 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 SLC5A7Q9GZV3 580 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 CHRDQ9H2X0 955 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ASIC5Q9NY37 505 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 PCDHGA8Q9Y5G5 932 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 IGHG1P01857 330 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ITGAMP11215 1152 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 C6orf15Q6UXA7 325 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 Q6ZPB1 254 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 TMEM150AQ86TG1 271 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ZNF597Q96LX8 424 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 WSB2Q9NYS7 404 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 MBD2Q9UBB5 411 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 SLC17A4Q9Y2C5 497 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 TTC3P53804 2025 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 SPTY2D1-AS1A0A0U1RR47 76 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 FBXO45P0C2W1 286 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 THBS2P35442 1172 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 C17orf67Q0P5P2 114 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 VASNQ6EMK4 673 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 FAM46BQ96A09 425 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 MRGPRX3Q96LB0 322 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 LMF1Q96S06 567 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 OR14I1A6ND48 311 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 KDM4EB2RXH2 506 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 FOXD2O60548 495 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 GFERP55789 205 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 MARCH3Q86UD3 253 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 MISPQ8IVT2 679 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 Q8N402 240 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 MYEF2Q9P2K5 600 aaKnown RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 KCNS2Q9ULS6 477 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 OR51B4Q9Y5P0 310 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 NRXN2Q9P2S2 1712 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 C2orf72A6NCS6 295 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 SLC2A5P22732 501 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 TSPAN31Q12999 210 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 MRPL21Q7Z2W9 205 aaKnown RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ABHD12BQ7Z5M8 362 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 NLRP8Q86W28 1048 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 INO80EQ8NBZ0 244 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 LINC00615Q96LM1 132 aaPredicted RBP13.85□□□□□ -0.19
COL17A1-201ENST00000353479 CDCP1Q9H5V8 836 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 ATP13A2Q9NQ11 1180 aa13.85□□□□□ -0.19
COL17A1-201ENST00000353479 PFDN2Q9UHV9 154 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms