RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 FOXS1O43638 330 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PRKNO60260 465 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 HPGDSO60760 199 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PRR23D2P0DMB1 279 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PYDC2Q56P42 97 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 ALG10BQ5I7T1 473 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PARGQ86W56 976 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 CADM2Q8N3J6 435 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 FAM181AQ8N9Y4 354 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 SETD6Q8TBK2 473 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 DNAJA4Q8WW22 397 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 AP3S1Q92572 193 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 DMRTB1Q96MA1 342 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 TNFRSF13CQ96RJ3 184 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 FN3KQ9H479 309 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 DAPL1A0PJW8 107 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 CHP2O43745 196 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PPM1FP49593 454 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 CCR5P51681 352 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 CRMP1Q14194 572 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 ZNF267Q14586 743 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 ZNF544Q6NX49 715 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 XKRXQ6PP77 449 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 OAFQ86UD1 273 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 UBQLNLQ8IYU4 475 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 RCBTB1Q8NDN9 531 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 KLHDC7BQ96G42 594 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 TEAD3Q99594 435 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 MMP28Q9H239 520 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 WSB2Q9NYS7 404 aaPredicted RBP17.86■□□□□ 0.45
COL9A3-201ENST00000343916 PCDHGB2Q9Y5G2 931 aa17.86■□□□□ 0.45
COL9A3-201ENST00000343916 A0A1W2PPC4 97 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 POLR1CO15160 346 aaPredicted RBP17.85■□□□□ 0.45
COL9A3-201ENST00000343916 MAOAP21397 527 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 APEX1P27695 318 aaKnown RBP17.85■□□□□ 0.45
COL9A3-201ENST00000343916 PGDP52209 483 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 ZNHIT3Q15649 155 aaPredicted RBP17.85■□□□□ 0.45
COL9A3-201ENST00000343916 NPSR1Q6W5P4 371 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 TDHQ8IZJ6 230 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 HOXB13Q92826 284 aaPredicted RBP17.85■□□□□ 0.45
COL9A3-201ENST00000343916 VSTM2LQ96N03 204 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 GPR27Q9NS67 375 aa17.85■□□□□ 0.45
COL9A3-201ENST00000343916 E9PI62 339 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 RNF13O43567 381 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 PTP4A3O75365 173 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 SCN1BQ07699 218 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 CRYZQ08257 329 aaKnown RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 GPR50Q13585 617 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 P2RY14Q15391 338 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 OR4C6Q8NH72 309 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 ATF6BQ99941 703 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 ORAI3Q9BRQ5 295 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 LMF2Q9BU23 707 aaKnown RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 JAM3Q9BX67 310 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 TTTY10Q9BZA0 68 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 C14orf105Q9NVL8 296 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 BABAM2Q9NXR7 383 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 TMEM5Q9Y2B1 443 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 BOLA1Q9Y3E2 137 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 CCDC182A6NF36 153 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 LRRN3E7EW58 273 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 GTPBP1O00178 669 aaKnown RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 CTBP2P56545 445 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 RACK1P63244 317 aaKnown RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 PRTGQ2VWP7 1150 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 CNIH2Q6PI25 160 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 ZNF517Q6ZMY9 492 aaPredicted RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 VASH1Q7L8A9 365 aaPredicted RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 NR2C2APQ86WQ0 139 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 GALNT6Q8NCL4 622 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 SENP5Q96HI0 755 aaPredicted RBP17.84■□□□□ 0.45
COL9A3-201ENST00000343916 OR2B2Q9GZK3 357 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 RNF32Q9H0A6 362 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 LRRN3Q9H3W5 708 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 POLE3Q9NRF9 147 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 HEATR5AQ86XA9 2040 aa17.84■□□□□ 0.45
COL9A3-201ENST00000343916 ANKRD34BA5PLL1 514 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 RNH1P13489 461 aaKnown RBP17.83■□□□□ 0.45
COL9A3-201ENST00000343916 MRPS15P82914 257 aaKnown RBP17.83■□□□□ 0.45
COL9A3-201ENST00000343916 FHL1Q13642 323 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 FAM27D1Q5T7N8 215 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 RPL13AP3Q6NVV1 102 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 LILRB4Q8NHJ6 448 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 C11orf54Q9H0W9 315 aaPredicted RBP17.83■□□□□ 0.45
COL9A3-201ENST00000343916 PPIL3Q9H2H8 161 aaKnown RBP17.83■□□□□ 0.45
COL9A3-201ENST00000343916 MCCC2Q9HCC0 563 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 LRIT1Q9P2V4 623 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 CLDN16Q9Y5I7 305 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 SDK1Q7Z5N4 2213 aa17.83■□□□□ 0.45
COL9A3-201ENST00000343916 RIIAD1A6NNX1 92 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 HCN1O60741 890 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 IGLV3-19P01714 112 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 ARL9Q6T311 187 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 RPTNQ6XPR3 784 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 ZNF426Q9BUY5 554 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 ERVK-19Q9WJR5 959 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 SLC35A3Q9Y2D2 325 aa17.83■□□□□ 0.44
COL9A3-201ENST00000343916 TMEM184BQ9Y519 407 aaPredicted RBP17.83■□□□□ 0.44
COL9A3-201ENST00000343916 SLC22A31A6NKX4 558 aa17.82■□□□□ 0.44
COL9A3-201ENST00000343916 CSF2P04141 144 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 89.1 ms