RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 OPCMLQ14982 345 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 NSDHLQ15738 373 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TCTE1Q5JU00 501 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 FAM69BQ5VUD6 431 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ARHGAP11AQ6P4F7 1023 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 FIP1L1Q6UN15 594 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 GDPD3Q7L5L3 318 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 SERPINA11Q86U17 422 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 ZNF679Q8IYX0 411 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TSTD1Q8NFU3 115 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 NUDT22Q9BRQ3 303 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 URM1Q9BTM9 101 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 SUCNR1Q9BXA5 334 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 MRPL22Q9NWU5 206 aaKnown RBP8.15□□□□□ -1.1
RTN3-202ENST00000339997 URGCP-MRPS24S4R325 110 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 TRIOBPQ9H2D6 2365 aa8.15□□□□□ -1.1
RTN3-202ENST00000339997 SNRNP200O75643 2136 aaKnown RBP8.15□□□□□ -1.11
RTN3-202ENST00000339997 A0A0A6YYC8 382 aaPredicted RBP8.15□□□□□ -1.11
RTN3-202ENST00000339997 A0A1W2PQ45 241 aaPredicted RBP8.15□□□□□ -1.11
RTN3-202ENST00000339997 A0A1W2PQY0 241 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 I3L1I5 382 aaPredicted RBP8.15□□□□□ -1.11
RTN3-202ENST00000339997 ACTL6BO94805 426 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 FAM189A2Q15884 450 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 ZMAT1Q5H9K5 638 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 SPRED1Q7Z699 444 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 SLC9B2Q86UD5 537 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 VRK3Q8IV63 474 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 SLC35F2Q8IXU6 374 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 CMIPQ8IY22 773 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 PGBD5Q8N414 524 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 ACOT4Q8N9L9 421 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 OR5H2Q8NGV7 314 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 OR10K1Q8NGX5 313 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 GHSRQ92847 366 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 ARL11Q969Q4 196 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 PKMYT1Q99640 499 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 RBM24Q9BX46 236 aaKnown RBP8.15□□□□□ -1.11
RTN3-202ENST00000339997 TGIF2Q9GZN2 237 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 FN3KQ9H479 309 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 WASH6PQ9NQA3 447 aa8.15□□□□□ -1.11
RTN3-202ENST00000339997 K7EPK0 472 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 SGK494L7N484 410 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ARNTLO00327 626 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 OR7A17O14581 309 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 SYT7O43581 403 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 HYAL3O43820 417 aaPredicted RBP8.14□□□□□ -1.11
RTN3-202ENST00000339997 SOD2P04179 222 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 RPA2P15927 270 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 CTHP32929 405 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ACTA2P62736 377 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ACTG2P63267 376 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 TAP2Q03519 686 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ENTPD8Q5MY95 495 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PDSS1Q5T2R2 415 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ZNF776Q68DI1 518 aaPredicted RBP8.14□□□□□ -1.11
RTN3-202ENST00000339997 BAIAP2L2Q6UXY1 529 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 LIN28BQ6ZN17 250 aaKnown RBP eCLIP8.14□□□□□ -1.119e-7■■■■□ 25.5
RTN3-202ENST00000339997 CLEC14AQ86T13 490 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 BATF2Q8N1L9 274 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 FAM71E2Q8N5Q1 922 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ELP5Q8TE02 316 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 SLC38A5Q8WUX1 472 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ADOQ96SZ5 270 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 GON7Q9BXV9 100 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PPA2Q9H2U2 334 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 MTHFD2LQ9H903 347 aaPredicted RBP8.14□□□□□ -1.11
RTN3-202ENST00000339997 CA5BQ9Y2D0 317 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 MED16Q9Y2X0 877 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PCDHGB2Q9Y5G2 931 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 LAMB2P55268 1798 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 E9PI62 339 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 RDH16O75452 317 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PET100P0DJ07 73 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 GABRR1P24046 479 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PCGF2P35227 344 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 GDNFP39905 211 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PPA1Q15181 289 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 DUSP7Q16829 419 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 EEF1A1P5Q5VTE0 462 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ZNF852Q6ZMS4 543 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 OR2T4Q8NH00 348 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 WFIKKN2Q8TEU8 576 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ZBTB8AQ96BR9 441 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ORAI1Q96D31 301 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 RADILQ96JH8 1075 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 OR2M4Q96R27 311 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 DDOQ99489 341 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ULBP3Q9BZM4 244 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 IKZF5Q9H5V7 419 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 DMRT3Q9NQL9 472 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ICKQ9UPZ9 632 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 PCYT1BQ9Y5K3 369 aaPredicted RBP8.14□□□□□ -1.11
RTN3-202ENST00000339997 NUBP2Q9Y5Y2 271 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 TMEM72A0PK05 275 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 CCSO14618 274 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ADAM23O75077 832 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 NDUFB2O95178 105 aa8.14□□□□□ -1.11
RTN3-202ENST00000339997 ATXN1LP0C7T5 689 aaKnown RBP8.14□□□□□ -1.11
RTN3-202ENST00000339997 ZNF888P0CJ79 500 aaPredicted RBP8.14□□□□□ -1.11
RTN3-202ENST00000339997 MPC1LP0DKB6 136 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.4 ms