RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 PIK3R3Q92569 461 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TEX37Q96LM6 180 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ACAD8Q9UKU7 415 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 B3GALT5Q9Y2C3 310 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 SNX11Q9Y5W9 270 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 FOCADQ5VW36 1801 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 C12orf71A8MTZ7 269 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PPM1DO15297 605 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 CLIC3O95833 236 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TFPTP0C1Z6 253 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 MMP11P24347 488 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF91Q05481 1191 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 RBPJQ06330 500 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 RAPSNQ13702 412 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 RUNX2Q13950 521 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 IZUMO1Q8IYV9 350 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 OR2L13Q8N349 312 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM102Q8N9M5 508 aaPredicted RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 C16orf52Q8NHV5 167 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 NANOS1Q8WY41 292 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 TAAR9Q96RI9 348 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 SLC25A37Q9NYZ2 338 aa6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PPIEQ9UNP9 301 aaKnown RBP6.37□□□□□ -1.39
SF3B1-201ENST00000335508 PARP14Q460N5 1801 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LOC105369274A0A096LPK9 316 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LOC102723532A0A0G2JNH3 316 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF12P17014 697 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SSTR4P31391 388 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 CDH15P55291 814 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF829Q3KNS6 432 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LRRN1Q6UXK5 716 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 PRSS42Q7Z5A4 293 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 OR4N4Q8N0Y3 316 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 CA13Q8N1Q1 262 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 THAP4Q8WY91 577 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 VWCEQ96DN2 955 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 FOLH1BQ9HBA9 442 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TNFRSF12AQ9NP84 129 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 NKIRAS2Q9NYR9 191 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 STUB1Q9UNE7 303 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 FTCDNL1E5RQL4 147 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 MTRF1O75570 445 aaKnown RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 PRKAR1AP10644 381 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF20P17024 532 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 PRKXP51817 358 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SLC35A1P78382 337 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ZIC1Q15915 447 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 JMJD6Q6NYC1 403 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF100Q8IYN0 542 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 HS3ST5Q8IZT8 346 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SLC15A4Q8N697 577 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 YIPF7Q8N8F6 280 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF454Q8N9F8 522 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 POC5Q8NA72 575 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 OR2Y1Q8NGV0 311 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ARL5BQ96KC2 179 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ARRDC1-AS1Q9H2J1 176 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SPNS1Q9H2V7 528 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SLAMF7Q9NQ25 335 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 UPB1Q9UBR1 384 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 KLHL21Q9UJP4 597 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 A0A087WUU8 490 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TRBV5-3A0A0A0MS03 114 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ARRDC5A6NEK1 342 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 DRD5P21918 477 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 GALNSP34059 522 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 WNT4P56705 351 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TAGLNQ01995 201 aaKnown RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ARHGAP11BQ3KRB8 267 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM244Q5VVB8 128 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SLX4IPQ5VYV7 408 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 PODNL1Q6PEZ8 512 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 IQCF2Q8IXL9 164 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 NUBPLQ8TB37 319 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 IFI44Q8TCB0 444 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LGALS12Q96DT0 336 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SRA1Q9HD15 236 aaKnown RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 STARD5Q9NSY2 213 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 KCMF1Q9P0J7 381 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ATXN7L1Q9ULK2 861 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TRAV36DV7A0A075B6V5 113 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 A0A0A6YYD5 115 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TRAV17A0A0B4J275 112 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 A0A1W2PR77 199 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 RFPL3O75679 317 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 GP1BAP07359 652 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 LINC00271P0C7V0 271 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ITGAMP11215 1152 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 FCGR2AP12318 317 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 SLC6A9P48067 706 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 OR2B6P58173 313 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 OR12D2P58182 307 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 PCBD1P61457 104 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 OR1Q1Q15612 314 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 DUSP7Q16829 419 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 TSSK4Q6SA08 328 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 IL20RBQ6UXL0 311 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 ABHD12BQ7Z5M8 362 aaPredicted RBP6.36□□□□□ -1.39
SF3B1-201ENST00000335508 OR4K13Q8NH42 304 aa6.36□□□□□ -1.39
SF3B1-201ENST00000335508 DUSP19Q8WTR2 217 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms