RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 LBX1P52954 281 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TAS2R20P59543 309 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SEMA3BQ13214 749 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 PUS10Q3MIT2 529 aaKnown RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 UBE2NLQ5JXB2 153 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TMPRSS9Q7Z410 1059 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 GLB1L2Q8IW92 636 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 CSNK1A1LQ8N752 337 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 DUSP19Q8WTR2 217 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 FOXJ1Q92949 421 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TSACCQ96A04 125 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 ISL2Q96A47 359 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 LRRC46Q96FV0 321 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 C4orf36Q96KX1 117 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 OR5M11Q96RB7 305 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SPIN2AQ99865 258 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SPIN2BQ9BPZ2 258 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 PELI2Q9HAT8 420 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SDHAF2Q9NX18 166 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 GDE1Q9NZC3 331 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 GMEB2Q9UKD1 530 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TMPRSS11EQ9UL52 423 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 HRH3Q9Y5N1 445 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TUBGCP6Q96RT7 1819 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 TNFRSF10BO14763 440 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 ZNF780AO75290 641 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 HLA-AP01891 365 aaKnown RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 PTBP1P26599 531 aaKnown RBP eCLIP10.79□□□□□ -0.68
VPS39-201ENST00000318006 RNF144AP50876 292 aaPredicted RBP10.79□□□□□ -0.68
VPS39-201ENST00000318006 KIAA1024LP59773 190 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 BAK1Q16611 211 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 LIPIQ6XZB0 460 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 RTL10Q7L3V2 364 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 OR5AR1Q8NGP9 310 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 PTCHD1Q96NR3 888 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 CNTNAP3Q9BZ76 1288 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 B3GAT2Q9NPZ5 323 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 SMCO4Q9NRQ5 59 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 KLRF1Q9NZS2 232 aa10.79□□□□□ -0.68
VPS39-201ENST00000318006 HRGP04196 525 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 CCR7P32248 378 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PPT1P50897 306 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 SGSHP51688 502 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 HTRA3P83110 453 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 OC90Q02509 493 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 PAN3Q58A45 887 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 AWAT2Q6E213 333 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PODNL1Q6PEZ8 512 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 DHRS4L2Q6PKH6 230 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ZNF440Q8IYI8 595 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PELI3Q8N2H9 469 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ANKLE1Q8NAG6 615 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 TMEM234Q8WY98 164 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 HOXB13Q92826 284 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 UBXN10Q96LJ8 280 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 KLHL15Q96M94 604 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ACTRT3Q9BYD9 372 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 C8orf33Q9H7E9 229 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 SLAMF7Q9NQ25 335 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 TIMM8BQ9Y5J9 83 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 CIB4A0PJX0 185 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 MEIS3P1A6NDR6 274 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 CDC123O75794 336 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 RNH1P13489 461 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 ARSAP15289 507 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 JUNDP17535 347 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 HOXC12P31275 282 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 CLRN1P58418 232 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 TMEM200AQ86VY9 491 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 CCDC71LQ8N9Z2 235 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 IL17RDQ8NFM7 739 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 OR4F15Q8NGB8 312 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 BORCS8Q96FH0 119 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PDLIM5Q96HC4 596 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 NKX2-4Q9H2Z4 354 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PPP4R1LQ9P1A2 415 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 APOBEC3BQ9UH17 382 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 SLC7A7Q9UM01 511 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PRSS21Q9Y6M0 314 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 LATO43561 262 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 LILRB3O75022 631 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ADAM23O75077 832 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 TP53P04637 393 aaPredicted RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 TIMP2P16035 220 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 HLA-FP30511 346 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 HOXC13P31276 330 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ARL3P36405 182 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ISL1P61371 349 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PGGHGQ32M88 737 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 MEPCEQ7L2J0 689 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 PARS2Q7L3T8 475 aaKnown RBP10.78□□□□□ -0.68
VPS39-201ENST00000318006 GATSQ8NAP1 163 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 OR4K17Q8NGC6 315 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 OR56B2PQ8NGI1 322 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 DTD2Q96FN9 168 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 RTP3Q9BQQ7 232 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 C1QTNF2Q9BXJ5 285 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 ERVMER34-1Q9H9K5 563 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 PDE7BQ9NP56 450 aa10.78□□□□□ -0.68
VPS39-201ENST00000318006 CORINQ9Y5Q5 1042 aa10.78□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms