RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 CLEC6AQ6EIG7 209 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF544Q6NX49 715 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 SLC22A25Q6T423 547 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 PIAS4Q8N2W9 510 aaPredicted RBP13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 MUC15Q8N387 334 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 TMCO5AQ8N6Q1 288 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 MZB1Q8WU39 189 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 SLC25A43Q8WUT9 341 aaPredicted RBP13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 ST8SIA1Q92185 356 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 FAM168AQ92567 244 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 PROX1Q92786 737 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 MOAP1Q96BY2 351 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 OTUB1Q96FW1 271 aaPredicted RBP13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 OR5B2Q96R09 309 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 TRMOQ9BU70 441 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 TNFRSF12AQ9NP84 129 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 SIRT3Q9NTG7 399 aaPredicted RBP13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 OXSMQ9NWU1 459 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 NPAP1Q9NZP6 1156 aa13.04□□□□□ -0.32
CCDC88B-201ENST00000301897 MALRD1Q5VYJ5 2156 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 IGKV3D-15A0A087WSY6 115 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 A0A1W2PNR3 127 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 CIB4A0PJX0 185 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 NPIPB9F8W1W9 429 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 GPR171O14626 319 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 AZIN1O14977 448 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 SMAD9O15198 467 aaKnown RBP13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 RIPK2O43353 540 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 UBL4AP11441 157 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 BCKDHAP12694 445 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 MAPK1P28482 360 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 CCT3P49368 545 aaKnown RBP13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 FABP6P51161 128 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 CHRNB3Q05901 458 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 QPRTQ15274 297 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 TOMM34Q15785 309 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 LSM12Q3MHD2 195 aaKnown RBP13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 LIPMQ5VYY2 423 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 FBXW9Q5XUX1 488 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 OR7E24Q6IFN5 339 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 BHLHB9Q6PI77 547 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF614Q8N883 585 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 CLHC1Q8NHS4 586 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 PSMA8Q8TAA3 256 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 SFXN5Q8TD22 340 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 TMEM234Q8WY98 164 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 OR5P2Q8WZ92 322 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 ZNF75CPQ92670 426 aaPredicted RBP13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 ZHX1-C8orf76Q96EF9 292 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 NMUR2Q9GZQ4 415 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 ATAD3AQ9NVI7 634 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 BAIAP2L1Q9UHR4 511 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 ATP6V1HQ9UI12 483 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 MID2Q9UJV3 735 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 PMF1-BGLAPU3KQ54 211 aa13.03□□□□□ -0.32
CCDC88B-201ENST00000301897 CCT8L1PA6NM43 557 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 E7EQL1 145 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 SULT2B1O00204 365 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 LSM1O15116 133 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 SCAMP2O15127 329 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 OIP5O43482 229 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 PLIN3O60664 434 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 CPA3P15088 417 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 USF1P22415 310 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 CD40P25942 277 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 FKBP2P26885 142 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 GZMKP49863 264 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 CCR4P51679 360 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 EFNA4P52798 201 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 TP53BP2Q13625 1128 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 SPDYE7PQ495Y7 208 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 TIGD2Q4W5G0 525 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 RFTN2Q52LD8 501 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 TMPPEQ6ZT21 453 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 MTDHQ86UE4 582 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 UBE2J2Q8N2K1 259 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 CCDC63Q8NA47 563 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 RFWD2Q8NHY2 731 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 C10orf105Q8TEF2 133 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 APH1AQ96BI3 265 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF300Q96RE9 604 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 PRPF18Q99633 342 aaKnown RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 LAT2Q9GZY6 243 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 FKRPQ9H9S5 495 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 ASB6Q9NWX5 421 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 TAS2R16Q9NYV7 291 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 PTGDR2Q9Y5Y4 395 aa13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 SPIN1Q9Y657 262 aaPredicted RBP13.02□□□□□ -0.33
CCDC88B-201ENST00000301897 NPIPA5A0A0B4J1W7 369 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 A0A1W2PPM1 405 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 C9JVG2 144 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 NPIPA7E9PJI5 369 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 DNPH1O43598 174 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 LMX1BO60663 402 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 DNAJA2O60884 412 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 RAD51DO75771 328 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 AK1P00568 194 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 LINC00032P0C843 101 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 NPIPA8P0DM63 369 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms