RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 SLC22A31A6NKX4 558 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 DIRAS1O95057 198 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ADH1BP00325 375 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 KNG1P01042 644 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 MMP2P08253 660 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 HOXB1P14653 301 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 CLCNKBP51801 687 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 AKR1C2P52895 323 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 IRF4Q15306 451 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 LCN10Q6JVE6 187 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 HIST2H3AQ71DI3 136 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ZNF765Q7L2R6 523 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SERINC5Q86VE9 423 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ZSCAN4Q8NAM6 433 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 B3GNT7Q8NFL0 401 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 NEIL3Q8TAT5 605 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RAET1EQ8TD07 263 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 CREB3L4Q8TEY5 395 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RAB39BQ96DA2 213 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 PKMYT1Q99640 499 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 CPEB1Q9BZB8 566 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 MCOLN1Q9GZU1 580 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ZNF768Q9H5H4 540 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS35-201ENST00000299138 CLCF1Q9UBD9 225 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 NEU3Q9UQ49 428 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 GON4LQ3T8J9 2241 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR5K3A6NET4 321 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 A6NL46 340 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 XRCC3O43542 346 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 FBXO24O75426 580 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 CD63P08962 238 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ARSBP15848 533 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 CPEP16870 476 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TAGLN2P37802 199 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 PTPRRQ15256 657 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 ADAM5Q6NVV9 412 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 FIP1L1Q6UN15 594 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 BPHLQ86WA6 291 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 ADGRG3Q86Y34 549 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 Q8N9G6 341 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 OR10Q1Q8NGQ4 319 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 OIT3Q8WWZ8 545 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 RGMAQ96B86 450 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TRMT2BQ96GJ1 504 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 NELL2Q99435 816 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 TSSK6Q9BXA6 273 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 LINC00597Q9H2U6 94 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 SOX17Q9H6I2 414 aaPredicted RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 TMPRSS4Q9NRS4 437 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 NLGN3Q9NZ94 848 aa6.02□□□□□ -1.45
VPS35-201ENST00000299138 MYEF2Q9P2K5 600 aaKnown RBP6.02□□□□□ -1.45
VPS35-201ENST00000299138 TLX3O43711 291 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 CNMDO75829 334 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SMPD1P17405 629 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 MTNR1AP48039 350 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 KCNJ5P48544 419 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ACTBP60709 375 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 MAXP61244 160 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ACTG1P63261 375 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 LAPTM4AQ15012 233 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 OR10K2Q6IF99 312 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 HSD17B13Q7Z5P4 300 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 NAA40Q86UY6 237 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ASB11Q8WXH4 323 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 OR4K3Q96R72 315 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FBXL12Q9NXK8 326 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 SLC25A37Q9NYZ2 338 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PHOX2AO14813 284 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 YKT6O15498 198 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 HLA-DOBP13765 273 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 CYP27C1Q4G0S4 372 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FNDC3BQ53EP0 1204 aaKnown RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 VASH1Q7L8A9 365 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 CPXM2Q8N436 756 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ANKRD53Q8N9V6 530 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 OR4C15Q8NGM1 316 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ZNF461Q8TAF7 563 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PTPN18Q99952 460 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 YIPF4Q9BSR8 244 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 CACNG6Q9BXT2 260 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ACPTQ9BZG2 426 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 V9GYS6 101 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ADAM12O43184 909 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ZNF749O43361 778 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 GABRB1P18505 474 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 CD1BP29016 333 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 EPHA5P54756 1037 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TAS2R20P59543 309 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 PPP2CBP62714 309 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FLI1Q01543 452 aaPredicted RBP6.01□□□□□ -1.45
VPS35-201ENST00000299138 TMEM35AQ53FP2 167 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 RAET1GQ6H3X3 334 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 CD200R1LQ6Q8B3 271 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 GDPD4Q6W3E5 623 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ADIPOR2Q86V24 386 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FAM129CQ86XR2 697 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 FAM217AQ8IXS0 508 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 ZNF683Q8IZ20 524 aa6.01□□□□□ -1.45
VPS35-201ENST00000299138 TMEM104Q8NE00 496 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms