RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 COPS3Q9UNS2 423 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 LRIT2A6NDA9 550 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ENPP1P22413 925 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 RPS24P62847 133 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 A0A0U1RQJ8 604 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ADAM12O43184 909 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 HOXB5P09067 269 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 GRM7Q14831 915 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 FAM110CQ1W6H9 321 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC24A4Q8NFF2 622 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SMOC2Q9H3U7 446 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 PIGVQ9NUD9 493 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 OR14J1Q9UGF5 321 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 LRRC30A6NM36 301 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 YJEFN3A6XGL0 299 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 TO15178 435 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 PTBP3O95758 552 aaKnown RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SERPINA2P20848 420 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ITGB8P26012 769 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SFXN2Q96NB2 322 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SOX7Q9BT81 388 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ZBTB20Q9HC78 741 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SDK1Q7Z5N4 2213 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 PPP1R3DO95685 299 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 CST3P01034 146 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 USF1P22415 310 aaPredicted RBP13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 FOXN2P32314 431 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 CDK5Q00535 292 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC17A1Q14916 467 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ADIRFQ15847 76 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF684Q5T5D7 378 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 C22orf39Q6P5X5 142 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 ARNT2Q9HBZ2 717 aa13.14□□□□□ -0.31
CCDC88A-201ENST00000263630 TCRBV7S2A1N4TA0A589 114 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 SCAMP2O15127 329 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 GDF5P43026 501 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM97Q5BJF2 176 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 CREB3L4Q8TEY5 395 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 TMEM175Q9BSA9 504 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 SPO11Q9Y5K1 396 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 TGFB1I1O43294 461 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 CHRM4P08173 479 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 MPC1LP0DKB6 136 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 KCNE1P15382 129 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 SLCO2A1Q92959 643 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 RAB18Q9NP72 206 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 DZANK1Q9NVP4 752 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC17A6Q9P2U8 582 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 KIAA1210Q9ULL0 1709 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF638Q14966 1978 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF701M0R085 212 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 OR9I1Q8NGQ6 314 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 CLSTN3Q9BQT9 956 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 B3GAT1Q9P2W7 334 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 TEX264Q9Y6I9 313 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ANHXE9PGG2 379 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 DPP4P27487 766 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 LARP4Q71RC2 724 aaKnown RBP eCLIP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 GLB1L2Q8IW92 636 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ENDOVQ8N8Q3 282 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 TRAPPC2LQ9UL33 140 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 CNIH1O95406 144 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 AHSGP02765 367 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 PCLAFQ15004 111 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 TECPR1Q7Z6L1 1165 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 OR5B3Q8NH48 314 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 SPAG17Q6Q759 2223 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 NUPL2O15504 423 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 NUDT21O43809 227 aaKnown RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ACRV1P26436 265 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 GKP32189 559 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ADGRA1Q86SQ6 560 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ZFP41Q8N8Y5 198 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ANGPTL6Q8NI99 470 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 ADAMTS14Q8WXS8 1223 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 DNAJA3Q96EY1 480 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 HEMK1Q9Y5R4 338 aaPredicted RBP13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 C1orf198Q9H425 327 aa13.13□□□□□ -0.31
CCDC88A-201ENST00000263630 SERTM2A0A1B0GWG4 89 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 KEAP1Q14145 624 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 KCNJ8Q15842 424 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 WDR92Q96MX6 357 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 CLCF1Q9UBD9 225 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC16A6O15403 523 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 CLIC3O95833 236 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 CA5AP35218 305 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC35G3Q8N808 338 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 BPIFCQ8NFQ6 507 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF689Q96CS4 500 aaPredicted RBP13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 HHLA2Q9UM44 414 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 BLACEA4D250 179 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 BMI1P35226 326 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 MEOX1P50221 254 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SLC7A9P82251 487 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 INCA1Q0VD86 236 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 FCRL1Q96LA6 429 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 ZNF860A6NHJ4 632 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 NKX6-3A6NJ46 265 aa13.12□□□□□ -0.31
CCDC88A-201ENST00000263630 SULT2B1O00204 365 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms