RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 SEC14L5O43304 696 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 SYNGR4O95473 234 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 IL33O95760 270 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 SMIM10L1P0DMW3 83 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 PRKCAP17252 672 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 MSX1P28360 303 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 CSF2RBP32927 897 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 DCTN2Q13561 401 aaKnown RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 RAB39AQ14964 217 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 SPHARQ15513 63 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 KLHL17Q6TDP4 642 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 C5orf46Q6UWT4 87 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 DEFB124Q8NES8 71 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 OR4N2Q8NGD1 307 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 SMIM10Q96HG1 83 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 CDCP1Q9H5V8 836 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 NTN4Q9HB63 628 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 RXFP3Q9NSD7 469 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 ASB6Q9NWX5 421 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 NINQ8N4C6 2090 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 CCL4P13236 92 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 AP1ARQ63HQ0 302 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 LEG1Q6P5S2 330 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 FAM199XQ6PEV8 388 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 P4HA3Q7Z4N8 544 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 LHFPL3Q86UP9 236 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM52Q8NDY8 209 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 OR6N2Q8NGY6 317 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 THEM6Q8WUY1 208 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 OR5B2Q96R09 309 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 MGLLQ99685 303 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 SERHL2Q9H4I8 314 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 B3GAT2Q9NPZ5 323 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 AASSQ9UDR5 926 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 CDHR4A6H8M9 788 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 ENTPD6O75354 484 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 CRHBPP24387 322 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 NAA10P41227 235 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 TAS2R43P59537 309 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 APOFQ13790 326 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 PUM1Q14671 1186 aaKnown RBP eCLIP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 QPRTQ15274 297 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 GPR32P1Q8NGA4 272 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF420Q8TAQ5 688 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 S100ZQ8WXG8 99 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 CCNL2Q96S94 520 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 UTP23Q9BRU9 249 aaKnown RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 DSN1Q9H410 356 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 GALNT8Q9NY28 637 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 BOKQ9UMX3 212 aaPredicted RBP10.68□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM14AQ9Y6G1 99 aa10.68□□□□□ -0.7
VPS4A-201ENST00000254950 HELZP42694 1942 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 SAGE2PA6NJ88 616 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 SERPINA3P01011 423 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 FRKP42685 505 aaPredicted RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 RBM34P42696 430 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 ARG2P78540 354 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 KRR1Q13601 381 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 DNASE1L3Q13609 305 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TRIM16LQ309B1 348 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 MAMSTRQ6ZN01 415 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 PLEKHG7Q6ZR37 379 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM179BQ7Z7N9 219 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 ZNF676Q8N7Q3 588 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 PLPP5Q8NEB5 264 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 OR5W2Q8NH69 310 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TSEN15Q8WW01 171 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 CHRNA10Q9GZZ6 450 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 VNN3Q9NY84 501 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 LAMP5Q9UJQ1 280 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TMED7-TICAM2A0A0A6YYA0 188 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 C4orf51C9J302 202 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 CCRL2O00421 344 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 ICOSLGO75144 302 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 HLA-DPB1P04440 258 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 CD2P06729 351 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 BLVRAP53004 296 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 CLRN1P58418 232 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 DUSP2Q05923 314 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 USP43Q70EL4 1123 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 IGFN1Q86VF2 1251 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 YIPF7Q8N8F6 280 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TMEM203Q969S6 136 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TWSG1Q9GZX9 223 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 PRMT8Q9NR22 394 aaPredicted RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 CKLFQ9UBR5 152 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 NTNG1Q9Y2I2 539 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 TMED7Q9Y3B3 224 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 LINC00854A0A1B0GVQ3 168 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 SULT2B1O00204 365 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 SUSD5O60279 629 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 GALNSP34059 522 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 IDUAP35475 653 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 RANBP1P43487 201 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 GZMMP51124 257 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 P2RX1P51575 399 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 RPS3AP61247 264 aaKnown RBP10.67□□□□□ -0.7
VPS4A-201ENST00000254950 ERVK-25P63136 954 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 OR7A5Q15622 319 aa10.67□□□□□ -0.7
VPS4A-201ENST00000254950 GPR139Q6DWJ6 353 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms