RNA–Protein interactions for RNA: ENST00000254351.8

SDC1-201, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC1, Length 3,147 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-201ENST00000254351 SLC5A10A0PJK1 596 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 DNASE2O00115 360 aaPredicted RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 GPR31O00270 319 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 KPNA3O00505 521 aaPredicted RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 CREBL2O60519 120 aaPredicted RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 ELFN1P0C7U0 828 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 GABRR2P28476 465 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 MC3RP41968 323 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 GDI2P50395 445 aaKnown RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 SEC61A1P61619 476 aaKnown RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 TGM3Q08188 693 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 ST3GAL3Q11203 375 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 ZNF614Q8N883 585 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 MRPS24Q96EL2 167 aaKnown RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 FN3KQ9H479 309 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 XKR8Q9H6D3 395 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 TM7SF3Q9NS93 570 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 PCYT1BQ9Y5K3 369 aaPredicted RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 PRICKLE3O43900 615 aaPredicted RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 ZGLP1P0C6A0 271 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 TMIGD3P0DMS9 266 aaPredicted RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 LIPCP11150 499 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 CBX5P45973 191 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 ANXA11P50995 505 aaKnown RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 MMP15P51511 669 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 FAM26DQ5JW98 314 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 SLC22A10Q63ZE4 541 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 THSD4Q6ZMP0 1018 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 IKBIPQ70UQ0 350 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 TMEM150AQ86TG1 271 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 TMEM25Q86YD3 366 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 CBLN2Q8IUK8 224 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 PCSK9Q8NBP7 692 aaKnown RBP13.33□□□□□ -0.28
SDC1-201ENST00000254351 CLRN3Q8NCR9 226 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 OR10K1Q8NGX5 313 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 TNFAIP8L1Q8WVP5 186 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 AMDHD1Q96NU7 426 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 SLC6A17Q9H1V8 727 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 KLHL31Q9H511 634 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 AHSPQ9NZD4 102 aa13.33□□□□□ -0.28
SDC1-201ENST00000254351 A8MXK9 166 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 PYCARD-AS1I3L0S3 204 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 LCMT2O60294 686 aaKnown RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 POP4O95707 220 aaKnown RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 EOMESO95936 686 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 IGHA1P01876 353 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 CBR1P16152 277 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 SOX2P48431 317 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 GPR85P60893 370 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 PITPNAQ00169 270 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 GNA13Q14344 377 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 KCNAB1Q14722 419 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 ZNF620Q6ZNG0 422 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 GDF7Q7Z4P5 450 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 SLC44A3Q8N4M1 653 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 OR13C2Q8NGS9 318 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 FANK1Q8TC84 345 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 GRHL3Q8TE85 626 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 SMPDL3BQ92485 455 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 SLC41A3Q96GZ6 507 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 DPYSL5Q9BPU6 564 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 HMX1Q9NP08 348 aaPredicted RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 STARD7Q9NQZ5 370 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 WBP1LQ9NX94 342 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 PTTG3PQ9NZH4 202 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 KLHL42Q9P2K6 505 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 GNG8Q9UK08 70 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 PLXNA3P51805 1871 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 ABHD14A-ACY1A0A1B0GW23 586 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 RPP14O95059 124 aaKnown RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 BMP7P18075 431 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 RAB3AP20336 220 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 BSGP35613 385 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 GK2Q14410 553 aaPredicted RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 OR7E24Q6IFN5 339 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 NIPAL3Q6P499 406 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 MEPCEQ7L2J0 689 aaKnown RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 RNF180Q86T96 592 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 OR9A2Q8NGT5 310 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 DVL3Q92997 716 aaPredicted RBP13.32□□□□□ -0.28
SDC1-201ENST00000254351 RELTQ969Z4 430 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 LYSMD1Q96S90 227 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 SPATA5L1Q9BVQ7 753 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 TAS2R10Q9NYW0 307 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 MOKQ9UQ07 419 aa13.32□□□□□ -0.28
SDC1-201ENST00000254351 H7C4K7 107 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 NDUFA2O43678 99 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 PCSK2P16519 638 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 B2MP61769 119 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 SERTAD2Q14140 314 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 CRMP1Q14194 572 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 GPNMBQ14956 572 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 METTL11BQ5VVY1 283 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 CD300LDQ6UXZ3 194 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 C17orf64Q86WR6 236 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 OR4N5Q8IXE1 308 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 OR4D10Q8NGI6 311 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 LHX9Q9NQ69 397 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 CCL26Q9Y258 94 aa13.31□□□□□ -0.28
SDC1-201ENST00000254351 A0A1W2PRU2 124 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms