RNA–Protein interactions for RNA: ENST00000023939.8

RTFDC1-201, Transcript of Protein RTF2 homolog, humanhuman

TSL 2 BASIC

Gene RTFDC1, Length 1,745 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-201ENST00000023939 RNFT2Q96EX2 444 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 GAL3ST4Q96RP7 486 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 JAM3Q9BX67 310 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 LAT2Q9GZY6 243 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 C12orf10Q9HB07 376 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 EXOSC1Q9Y3B2 195 aaKnown RBP13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 PCDHGB2Q9Y5G2 931 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 PCDHGA3Q9Y5H0 932 aa13.13□□□□□ -0.31
RTFDC1-201ENST00000023939 SEC16AO15027 2179 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 SAGE2PA6NJ88 616 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 IDSB3KWA1 339 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 ALG1L2C9J202 215 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 M0R3G1 203 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 PRKNO60260 465 aaPredicted RBP13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 ALOX12BO75342 701 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 REM1O75628 298 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 SAGP10523 405 aaPredicted RBP13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 GADD45AP24522 165 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 SLC9A3P48764 834 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 CDH11P55287 796 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 TUBA1BP68363 451 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 TMED1Q13445 227 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 DCTN2Q13561 401 aaKnown RBP13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 MED22Q15528 200 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 TIMM50Q3ZCQ8 353 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 DBX2Q6ZNG2 339 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 RTL4Q6ZR62 310 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 TUBA1AQ71U36 451 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 NUP54Q7Z3B4 507 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 SLCO6A1Q86UG4 719 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 ATCAYQ86WG3 371 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 GID4Q8IVV7 300 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 RPL3LQ92901 407 aaKnown RBP13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 LOXL4Q96JB6 756 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 DACH2Q96NX9 599 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 OPALINQ96PE5 141 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 ADOQ96SZ5 270 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 TMEM43Q9BTV4 400 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 CMC2Q9NRP2 79 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 CLEC2DQ9UHP7 191 aa13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 EXOGQ9Y2C4 368 aaKnown RBP13.12□□□□□ -0.31
RTFDC1-201ENST00000023939 TMEM129A0AVI4 362 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 FAM86C2PA6NEL3 165 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 CCRL2O00421 344 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 OIP5O43482 229 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 EIF4E2O60573 245 aaKnown RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ICOSLGO75144 302 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 CSO75390 466 aaKnown RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 CH25HO95992 272 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 GP1BAP07359 652 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 HEXBP07686 556 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 SP9P0CG40 484 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 FUT1P19526 365 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 PTNP21246 168 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 IL12BP29460 328 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 SLC6A6P31641 620 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 NR0B1P51843 470 aaKnown RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 VBP1P61758 197 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 NCS1P62166 190 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 PLCXD2Q0VAA5 305 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 MLLT11Q13015 90 aaPredicted RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 C1DQ13901 141 aaKnown RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ARMC4Q5T2S8 1044 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 PHF19Q5T6S3 580 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 THSD4Q6ZMP0 1018 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ATG4DQ86TL0 474 aaPredicted RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 OAFQ86UD1 273 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 BMPERQ8N8U9 685 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 NDNFQ8TB73 568 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 PHOSPHO1Q8TCT1 267 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 LIPHQ8WWY8 451 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 OMA1Q96E52 524 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ARSGQ96EG1 525 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 SGTBQ96EQ0 304 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 VMP1Q96GC9 406 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 LRFN5Q96NI6 719 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ENKD1Q9H0I2 346 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 SYNDIG1Q9H7V2 258 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 MCCC2Q9HCC0 563 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ISYNA1Q9NPH2 558 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 HINT3Q9NQE9 182 aaKnown RBP13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 OCIAD1Q9NX40 245 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 ADAMTS9Q9P2N4 1935 aa13.11□□□□□ -0.31
RTFDC1-201ENST00000023939 GTPBP1O00178 669 aaKnown RBP13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 MYL12AP19105 171 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 ABCD3P28288 659 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 CLK1P49759 484 aaKnown RBP13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 RNF4P78317 190 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 FOXK2Q01167 660 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 CRYZQ08257 329 aaKnown RBP13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 DOC2BQ14184 412 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 DGUOKQ16854 277 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 TMEM205Q6UW68 189 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 GDPGP1Q6ZNW5 385 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 CXXC5Q7LFL8 322 aaKnown RBP13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 APCDD1LQ8NCL9 501 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 AGBL5Q8NDL9 886 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 OR8K3Q8NH51 312 aa13.1□□□□□ -0.31
RTFDC1-201ENST00000023939 NUBPLQ8TB37 319 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms