RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 DTD2Q96FN9 168 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 LIN37Q96GY3 246 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 TECTBQ96PL2 329 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OR14A2Q96R54 314 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 DPH2Q9BQC3 489 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OCSTAMPQ9BR26 566 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 MRI1Q9BV20 369 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 PLCH1Q4KWH8 1693 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 LRRC10BA6NIK2 292 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OR6C65A6NJZ3 312 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF814B7Z6K7 855 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 NUDT21O43809 227 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 PCBP4P57723 403 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 C9orf135Q5VTT2 229 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SBSNQ6UWP8 590 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 USP51Q70EK9 711 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OR52B6Q8NGF0 335 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ASB17Q8WXJ9 295 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SLC6A18Q96N87 628 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SSX3Q99909 188 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 VN1R3Q9BXE9 311 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CDCP1Q9H5V8 836 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF286AQ9HBT8 521 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 COL3A1P02461 1466 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CDRT1O95170 752 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SIX3O95343 332 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ABHD16AO95870 558 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 AGTR1P30556 359 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CD79BP40259 229 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 GPR4P46093 362 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 BMXP51813 675 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 AGFG1P52594 562 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 EDDM3BP56851 147 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OR8G1Q15617 311 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 LTC4SQ16873 150 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ANKDD1AQ495B1 522 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CLVS2Q5SYC1 327 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 GARNL3Q5VVW2 1013 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CPXM2Q8N436 756 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 RBM15BQ8NDT2 890 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ITFG2Q969R8 447 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 IMP4Q96G21 291 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CMSS1Q9BQ75 279 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SLCO3A1Q9UIG8 710 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 MYO7AQ13402 2215 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 A0A1B0GX78 115 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SLITRK5O94991 958 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 EGFP01133 1207 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 GJA4P35212 333 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 UCNP55089 124 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 CXADRP78310 365 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 TMEM176BQ3YBM2 270 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 ZFAND4Q86XD8 727 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OR4D6Q8NGJ1 314 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 OR52E1Q8NGJ3 308 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 RHEBL1Q8TAI7 183 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 STON2Q8WXE9 905 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 LRCH3Q96II8 777 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 AKR1E2Q96JD6 320 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 GATA5Q9BWX5 397 aaPredicted RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 BARHL1Q9BZE3 327 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SMCO4Q9NRQ5 59 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 SIDT1Q9NXL6 827 aaKnown RBP5.76□□□□□ -1.49
SCN1A-217ENST00000637988 RALGAPA1Q6GYQ0 2036 aa5.76□□□□□ -1.49
SCN1A-217ENST00000637988 PRRC2BQ5JSZ5 2229 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 NDUFB2O95178 105 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 UBCP0CG48 685 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 FPR1P21462 350 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PTAFRP25105 342 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 AHRP35869 848 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PPT1P50897 306 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 GPR50Q13585 617 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ESPL1Q14674 2120 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 C14orf28Q4W4Y0 310 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SFT2D3Q587I9 215 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 EGFLAMQ63HQ2 1017 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ZFAND1Q8TCF1 268 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 INTS14Q96SY0 518 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 OCEL1Q9H607 264 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ACSL6Q9UKU0 697 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 MYADML2A6NDP7 307 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF487B1APH4 448 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PRDX3P30048 256 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 RGRP47804 291 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 HK3P52790 923 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 HADHBP55084 474 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 TRA2BP62995 288 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SLC7A9P82251 487 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 AGAP6Q5VW22 663 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 SGK3Q96BR1 496 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 FGGYQ96C11 551 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ZNF845Q96IR2 970 aaPredicted RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 PDLIM2Q96JY6 352 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 NDFIP1Q9BT67 221 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 ST6GALNAC5Q9BVH7 336 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LINC00597Q9H2U6 94 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 APOBEC3GQ9HC16 384 aaKnown RBP5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LOXL2Q9Y4K0 774 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 CCDC187A0A096LP49 1063 aa5.75□□□□□ -1.49
SCN1A-217ENST00000637988 LRP5LA4QPB2 252 aa5.75□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms