RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 GAS1P54826 345 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 COPZ1P61923 177 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 ALG10BQ5I7T1 473 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 FCRLBQ6BAA4 426 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 LINC00114Q6XXX2 140 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 RRM2BQ7LG56 351 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 PRICKLE2Q7Z3G6 844 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 RNF113BQ8IZP6 322 aaKnown RBP16.84■□□□□ 0.29
CLN3-254ENST00000637050 CADM2Q8N3J6 435 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 TMCO5AQ8N6Q1 288 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 OR10G3Q8NGC4 313 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 DNAJA4Q8WW22 397 aaPredicted RBP16.84■□□□□ 0.29
CLN3-254ENST00000637050 GATA6Q92908 595 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 MPP4Q96JB8 637 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 MUS81Q96NY9 551 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 ZNF426Q9BUY5 554 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 RPS6KB2Q9UBS0 482 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 REV1Q9UBZ9 1251 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 ENOPH1Q9UHY7 261 aa16.84■□□□□ 0.29
CLN3-254ENST00000637050 C17orf51A8MQB3 221 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 OR6B1O95007 311 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 OMPP47874 163 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 SSR4P51571 173 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 CCR4P51679 360 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 COX10Q12887 443 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 IL18R1Q13478 541 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 KEAP1Q14145 624 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 WBP2NLQ6ICG8 309 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 NRMQ8IXM6 262 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 DND1Q8IYX4 353 aaKnown RBP16.83■□□□□ 0.28
CLN3-254ENST00000637050 PIGXQ8TBF5 258 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 GNPDA2Q8TDQ7 276 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 TMEM239Q8WW34 195 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 SH3YL1Q96HL8 342 aaPredicted RBP16.83■□□□□ 0.28
CLN3-254ENST00000637050 HS6ST2Q96MM7 605 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 PITX2Q99697 317 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 GPA33Q99795 319 aa16.83■□□□□ 0.28
CLN3-254ENST00000637050 NDRG4Q9ULP0 352 aaKnown RBP16.83■□□□□ 0.28
CLN3-254ENST00000637050 BCKDKO14874 412 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 LIFP15018 202 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 RBM34P42696 430 aaKnown RBP16.82■□□□□ 0.28
CLN3-254ENST00000637050 GSSP48637 474 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 IDH2P48735 452 aaKnown RBP16.82■□□□□ 0.28
CLN3-254ENST00000637050 P2RX1P51575 399 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 ESRRGP62508 458 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 KRT80Q6KB66 452 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 OR5W2Q8NH69 310 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 DUSP19Q8WTR2 217 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 ASB15Q8WXK1 588 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 C3orf49Q96BT1 292 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 HRASLS5Q96KN8 279 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 KLHDC3Q9BQ90 382 aa16.82■□□□□ 0.28
CLN3-254ENST00000637050 CHCHD2Q9Y6H1 151 aaPredicted RBP16.82■□□□□ 0.28
CLN3-254ENST00000637050 DCDC2BA2VCK2 349 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 TP53I11O14683 189 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 KLF4O43474 513 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 PIP5K1CO60331 668 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 OSMP13725 252 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 GSTM3P21266 225 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 PTGDSP41222 190 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 RPS6KA3P51812 740 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 CHN2P52757 468 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 RPP38P78345 283 aaKnown RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 C17orf67Q0P5P2 114 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 DCAF10Q5QP82 559 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 ZNF691Q5VV52 312 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 JMJD6Q6NYC1 403 aaPredicted RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 TMEM81Q6P7N7 255 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 C8orf59Q8N0T1 100 aaPredicted RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 RNF217Q8TC41 542 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 PSMF1Q92530 271 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 ZNF524Q96C55 264 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 CCNL2Q96S94 520 aaPredicted RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 GALNT9Q9HCQ5 603 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 SELENONQ9NZV5 590 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 AHCTF1Q8WYP5 2266 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 HEATR5AQ86XA9 2040 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 A0A087WUJ7 227 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 TP53P04637 393 aaPredicted RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 PGCP20142 388 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 SDHBP21912 280 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 MST1P26927 711 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 CRISP1P54107 249 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 ALDH6A1Q02252 535 aaKnown RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 PRKCDQ05655 676 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 TSPAN31Q12999 210 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 RAPSNQ13702 412 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 BICRALQ6AI39 1079 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 IL20RBQ6UXL0 311 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 B4GALNT2Q8NHY0 566 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 BRIX1Q8TDN6 353 aaKnown RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 FAM46AQ96IP4 442 aaKnown RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 SECISBP2Q96T21 854 aaKnown RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 METTL7AQ9H8H3 244 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 KRCC1Q9NPI7 259 aaPredicted RBP16.81■□□□□ 0.28
CLN3-254ENST00000637050 PNPLA3Q9NST1 481 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 KLRF1Q9NZS2 232 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 GMPPBQ9Y5P6 360 aa16.81■□□□□ 0.28
CLN3-254ENST00000637050 LYNP07948 512 aa16.8■□□□□ 0.28
CLN3-254ENST00000637050 CHMP24386 653 aa16.8■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms