RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ENAMQ9NRM1 1142 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 SCML1Q9UN30 329 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 MRPS2Q9Y399 296 aaKnown RBP11.81□□□□□ -0.52
LINC00540-203ENST00000631321 NPIPA5A0A0B4J1W7 369 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 A0A0B4J2E0 115 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 A0A0G2JMP0 313 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 A0A0X1KG70 313 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 A0A1B0GX12 115 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 GRXCR1A8MXD5 290 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 NPIPA7E9PJI5 369 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 H0YGG7 62 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TNFRSF10CO14798 259 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 REM1O75628 298 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 C1QBP02746 253 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 GUSBP08236 651 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 NPIPA8P0DM63 369 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 COL9A1P20849 921 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 INPP1P49441 399 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ARF3P61204 181 aaPredicted RBP11.81□□□□□ -0.52
LINC00540-203ENST00000631321 BTG1P62324 171 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 POU6F2P78424 691 aaPredicted RBP11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF85Q03923 595 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 CSTF1Q05048 431 aaKnown RBP11.81□□□□□ -0.52
LINC00540-203ENST00000631321 FAPQ12884 760 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TNK1Q13470 666 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 KLHL12Q53G59 568 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 MANEAQ5SRI9 462 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 SDE2Q6IQ49 451 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 OR4M2Q8NGB6 313 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TSACCQ96A04 125 aaPredicted RBP11.81□□□□□ -0.52
LINC00540-203ENST00000631321 BMFQ96LC9 184 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF426Q9BUY5 554 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 GON7Q9BXV9 100 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TMEM168Q9H0V1 697 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 FOLH1BQ9HBA9 442 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 TRPV5Q9NQA5 729 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 SPACA6W5XKT8 324 aa11.81□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF860A6NHJ4 632 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RIIAD1A6NNX1 92 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 LDB3O75112 727 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 NKX2-2O95096 273 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 ARSBP15848 533 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 POLR2CP19387 275 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 NT5EP21589 574 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 SLC6A1P30531 599 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 AGFG1P52594 562 aaKnown RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 E2F1Q01094 437 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 GPR176Q14439 515 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 C1QTNF12Q5T7M4 302 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 DMKNQ6E0U4 476 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 SFXN4Q6P4A7 337 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 ARL9Q6T311 187 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RNF44Q7L0R7 432 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 VASH1Q7L8A9 365 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 PRSS41Q7RTY9 318 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 OR4M1Q8NGD0 313 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 GRPEL2Q8TAA5 225 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 ABHD4Q8TB40 342 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 FGF14Q92915 247 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 PGLYRP3Q96LB9 341 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 YIPF2Q9BWQ6 316 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 TMEM27Q9HBJ8 222 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 CA5BQ9Y2D0 317 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 TRBV23OR9-2A0A075B6M9 112 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 GXYLT2A0PJZ3 443 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 OR6C74A6NCV1 312 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 OR6C70A6NIJ9 312 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 H0Y8X5 98 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 CHP2O43745 196 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RFPL3O75679 317 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 EIF4EP06730 217 aaKnown RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 HK1P19367 917 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 NOS3P29474 1203 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 GABRA3P34903 492 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 TALDO1P37837 337 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RBM34P42696 430 aaKnown RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 ATP12AP54707 1039 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RRAS2P62070 204 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 POU4F2Q12837 409 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 FHL1Q13642 323 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 PLA1AQ53H76 456 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 HACD4Q5VWC8 232 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 ZNF57Q68EA5 555 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 FAM109BQ6ICB4 259 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 FIGNL1Q6PIW4 674 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 UBE2Q1Q7Z7E8 422 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 PLCZ1Q86YW0 608 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 GRAMD2AQ8IUY3 354 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 BAHD1Q8TBE0 780 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 DOK4Q8TEW6 326 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RERGQ96A58 199 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 CDCA3Q99618 268 aaPredicted RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 WACQ9BTA9 647 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RPP25Q9BUL9 199 aaKnown RBP11.8□□□□□ -0.52
LINC00540-203ENST00000631321 ERVMER34-1Q9H9K5 563 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 FLRT3Q9NZU0 649 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 RASD1Q9Y272 281 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 DOCK8Q8NF50 2099 aa11.8□□□□□ -0.52
LINC00540-203ENST00000631321 INMT-MINDY4F8WBC2 141 aa11.79□□□□□ -0.52
LINC00540-203ENST00000631321 SOX30O94993 753 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms