RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 CHMP24386 653 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 PCGF2P35227 344 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 ADRM1Q16186 407 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 GLYR1Q49A26 553 aaPredicted RBP16.36■□□□□ 0.21
CLN3-239ENST00000628023 ZNF311Q5JNZ3 666 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 DCST1Q5T197 706 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 VASNQ6EMK4 673 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 NET1Q7Z628 596 aaPredicted RBP16.36■□□□□ 0.21
CLN3-239ENST00000628023 PTOV1Q86YD1 416 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 DOLPP1Q86YN1 238 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 ZZZ3Q8IYH5 903 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 FAM71CQ8NEG0 241 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 SMPDL3BQ92485 455 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 CNOT9Q92600 299 aaKnown RBP16.36■□□□□ 0.21
CLN3-239ENST00000628023 TIMP4Q99727 224 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 TAGLN3Q9UI15 199 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 AP3M1Q9Y2T2 418 aa16.36■□□□□ 0.21
CLN3-239ENST00000628023 OR2M5A3KFT3 312 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 H0Y3Z8 333 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 LINC01387J3KSC0 135 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 WDR1O75083 606 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 BCAS1O75363 584 aaPredicted RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 SERPINB7O75635 380 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 PABPC4LP0CB38 370 aaKnown RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 UQCRBP14927 111 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 PGCP20142 388 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 HTR1EP28566 365 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 RYKP34925 604 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 EIF1P41567 113 aaKnown RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 SLC6A8P48029 635 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 GFRA1P56159 465 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 SRYQ05066 204 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 FOXF1Q12946 379 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 QPRTQ15274 297 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 ZSWIM7Q19AV6 140 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 INTS11Q5TA45 600 aaKnown RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 HACD2Q6Y1H2 254 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 GTPBP8Q8N3Z3 284 aaPredicted RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 ZNF563Q8TA94 476 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 GPR119Q8TDV5 335 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 ARSGQ96EG1 525 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 RNF145Q96MT1 663 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 HOPXQ9BPY8 73 aaPredicted RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 KLHDC3Q9BQ90 382 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 EXOSC3Q9NQT5 275 aaKnown RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 DNAJB12Q9NXW2 375 aaKnown RBP16.35■□□□□ 0.21
CLN3-239ENST00000628023 STOML1Q9UBI4 398 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 SLC13A4Q9UKG4 626 aa16.35■□□□□ 0.21
CLN3-239ENST00000628023 MED12Q93074 2177 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 PCNX1Q96RV3 2341 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 CDHR4A6H8M9 788 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 PRORSD1PA6NEY8 169 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 FAM220BPB1ANY3 271 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 LINGO3P0C6S8 592 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 PEPDP12955 493 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 COX6B1P14854 86 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 GABRA1P14867 456 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 AGAP20933 346 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 ME2P23368 584 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 ACVR2AP27037 513 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 PTGER4P35408 488 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 STARP49675 285 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 SLC7A2P52569 658 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 B3GALT5-AS1P59052 145 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 EEF1A1P68104 462 aaKnown RBP16.34■□□□□ 0.21
CLN3-239ENST00000628023 MXRA7P84157 204 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 SF3B4Q15427 424 aaKnown RBP eCLIP16.34■□□□□ 0.212e-7■■■■□ 24.8
CLN3-239ENST00000628023 TOMM34Q15785 309 aaPredicted RBP16.34■□□□□ 0.21
CLN3-239ENST00000628023 EMC4Q5J8M3 183 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 RNF220Q5VTB9 566 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 FAM91A1Q658Y4 838 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 ERICH5Q6P6B1 374 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 ZNF440Q8IYI8 595 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 UBQLNLQ8IYU4 475 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 TMEM234Q8WY98 164 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 REXO5Q96IC2 774 aaKnown RBP16.34■□□□□ 0.21
CLN3-239ENST00000628023 PRDM14Q9GZV8 571 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 ARL8BQ9NVJ2 186 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 RLIMQ9NVW2 624 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 MEMO1Q9Y316 297 aa16.34■□□□□ 0.21
CLN3-239ENST00000628023 GPC6Q9Y625 555 aaPredicted RBP16.34■□□□□ 0.21
CLN3-239ENST00000628023 PCNX3Q9H6A9 2034 aa16.33■□□□□ 0.21
CLN3-239ENST00000628023 C7orf72A4D263 438 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 CFAP73A6NFT4 308 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 CCT8L1PA6NM43 557 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 E9PLN8 166 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 SEC14L5O43304 696 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 PRF1P14222 555 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 PRKCAP17252 672 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 LHX2P50458 406 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 VMACQ2NL98 169 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 C1orf185Q5T7R7 199 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 ARMC8Q8IUR7 673 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 ULK2Q8IYT8 1036 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 MEIOBQ8N635 442 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 FITM2Q8N6M3 262 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 OR2T12Q8NG77 320 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 ST8SIA1Q92185 356 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 WDYHV1Q96HA8 205 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 MRGPRX4Q96LA9 322 aa16.33■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms