RNA–Protein interactions for RNA: ENST00000612273.1

COL6A1-207, Transcript of collagen type VI alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL6A1, Length 3,251 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-207ENST00000612273 HLA-DMAP28067 261 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 HOXD11P31277 338 aaPredicted RBP13.04□□□□□ -0.32
COL6A1-207ENST00000612273 ATP12AP54707 1039 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 FOXK2Q01167 660 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 ARHGEF6Q15052 776 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 DEFB110Q30KQ9 67 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 FAAP20Q6NZ36 180 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 NIPAL3Q6P499 406 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 MEPCEQ7L2J0 689 aaKnown RBP13.04□□□□□ -0.32
COL6A1-207ENST00000612273 SMARCD2Q92925 531 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 GIMAP5Q96F15 307 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 CFAP54Q96N23 3096 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 NDC1Q9BTX1 674 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 SRMSQ9H3Y6 488 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 KCNE5Q9UJ90 142 aa13.04□□□□□ -0.32
COL6A1-207ENST00000612273 ARHGEF17Q96PE2 2063 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CXorf51AA0A1B0GTR3 108 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CIB4A0PJX0 185 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 IDSB3KWA1 339 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 SSNA1O43805 119 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TBX19O60806 448 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 FZD7O75084 574 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 C1QBP02746 253 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 PKLRP30613 574 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ACSL1P33121 698 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 GJA4P35212 333 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 PITPNBP48739 271 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 RUNX2Q13950 521 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 POU4F3Q15319 338 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 DECR1Q16698 335 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 DUSP6Q16828 381 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 SLC25A30Q5SVS4 291 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 MRM1Q6IN84 353 aaKnown RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TOMM5Q8N4H5 51 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 SLC44A3Q8N4M1 653 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR4K14Q8NGD5 310 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR6K6Q8NGW6 343 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR4C6Q8NH72 309 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ABHD4Q8TB40 342 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 HCAR2Q8TDS4 363 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 HS6ST2Q96MM7 605 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 MARVELD1Q9BSK0 173 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 DPCDQ9BVM2 203 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CACNG6Q9BXT2 260 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 AUNIPQ9H7T9 357 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 IL21RQ9HBE5 538 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 A0A087WV48 116 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TEX13CA0A0J9YWL9 993 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 FAM86C2PA6NEL3 165 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CTSVO60911 334 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 IL9P15248 144 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR3A3P47888 321 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 VSX2P58304 361 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 RPL6Q02878 288 aaKnown RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 RNLSQ5VYX0 342 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OAFQ86UD1 273 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 SIAH3Q8IW03 269 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 IL17RCQ8NAC3 791 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TTLQ8NG68 377 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR52E2Q8NGJ4 325 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CCDC120Q96HB5 630 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 SPRTNQ9H040 489 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 C11orf49Q9H6J7 331 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 MTHFD2LQ9H903 347 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CLDND1Q9NY35 253 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ADAM18Q9Y3Q7 739 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 BRWD1Q9NSI6 2320 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TEX46H3BTG2 121 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 RASGRP1O95267 797 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ADRB1P08588 477 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF136P52737 540 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 SHC2P98077 582 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TMEM64Q6YI46 380 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CDK20Q8IZL9 346 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ZNF655Q8N720 491 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR11H7Q8NGC8 314 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR11H4Q8NGC9 324 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 OR2L8Q8NGY9 312 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CNOT9Q92600 299 aaKnown RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 BADQ92934 168 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 NKX3-1Q99801 234 aaPredicted RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 COQ7Q99807 217 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 RPP25Q9BUL9 199 aaKnown RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 MRPS18AQ9NVS2 196 aaKnown RBP13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TMEM5Q9Y2B1 443 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 CACNG2Q9Y698 323 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 TRANK1O15050 2925 aa13.03□□□□□ -0.32
COL6A1-207ENST00000612273 ICMTO60725 284 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 RPP14O95059 124 aaKnown RBP13.02□□□□□ -0.32
COL6A1-207ENST00000612273 SLC35G6P0C7Q6 338 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 P2RX3P56373 397 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 MLC1Q15049 377 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 ZIC1Q15915 447 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 HES5Q5TA89 166 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 RANBP3LQ86VV4 465 aaPredicted RBP13.02□□□□□ -0.32
COL6A1-207ENST00000612273 GATSQ8NAP1 163 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 TMEM52Q8NDY8 209 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 DUSP18Q8NEJ0 188 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 OR4N2Q8NGD1 307 aa13.02□□□□□ -0.32
COL6A1-207ENST00000612273 OR5M3Q8NGP4 307 aa13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms