RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 UBQLN3Q9H347 655 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 QPCTLQ9NXS2 382 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 B4GALT7Q9UBV7 327 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 LHX6Q9UPM6 363 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 AURKCQ9UQB9 309 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 MRPS18CQ9Y3D5 142 aaKnown RBP13.05□□□□□ -0.32
UPF1-211ENST00000600868 ENPP4Q9Y6X5 453 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 HEATR5AQ86XA9 2040 aa13.05□□□□□ -0.32
UPF1-211ENST00000600868 ITPR1Q14643 2758 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 FAM47E-STBD1D6RA91 191 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ETV2O00321 342 aaPredicted RBP13.04□□□□□ -0.32
UPF1-211ENST00000600868 RASAL1O95294 804 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 NUDT14O95848 222 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 FABP3P05413 133 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 RFPL3SP0C7P2 107 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 HTR2AP28223 471 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 DLX5P56178 289 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 COPZ1P61923 177 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 HOXC5Q00444 222 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 PLGLB1Q02325 96 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 QPRTQ15274 297 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 GLYR1Q49A26 553 aaPredicted RBP13.04□□□□□ -0.32
UPF1-211ENST00000600868 IQCCQ4KMZ1 466 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 WBP2NLQ6ICG8 309 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ZFP1Q6P2D0 407 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ARSKQ6UWY0 536 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 DEF8Q6ZN54 512 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 SLC22A16Q86VW1 577 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ZDHHC21Q8IVQ6 265 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 TMEM234Q8WY98 164 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ST8SIA1Q92185 356 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 SLCO4A1Q96BD0 722 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ZNF300Q96RE9 604 aaPredicted RBP13.04□□□□□ -0.32
UPF1-211ENST00000600868 KLHDC3Q9BQ90 382 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 CHID1Q9BWS9 393 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 ZNF703Q9H7S9 590 aaPredicted RBP13.04□□□□□ -0.32
UPF1-211ENST00000600868 TMEM27Q9HBJ8 222 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 MED17Q9NVC6 651 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 TAS2R10Q9NYW0 307 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 NDUFAF4Q9P032 175 aa13.04□□□□□ -0.32
UPF1-211ENST00000600868 PCNX3Q9H6A9 2034 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ACOT7O00154 380 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 GMFGO60234 142 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 SEMA7AO75326 666 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ENTPD5O75356 428 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 RHCEP18577 417 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 DPP4P27487 766 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 SRD5A2P31213 254 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 SLC1A3P43003 542 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 IDH2P48735 452 aaKnown RBP13.03□□□□□ -0.32
UPF1-211ENST00000600868 ZNF41P51814 821 aaPredicted RBP13.03□□□□□ -0.32
UPF1-211ENST00000600868 OR1Q1Q15612 314 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 TOMM34Q15785 309 aaPredicted RBP13.03□□□□□ -0.32
UPF1-211ENST00000600868 PLPPR5Q32ZL2 321 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 NADK2Q4G0N4 442 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 SLC25A53Q5H9E4 307 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ENTPD8Q5MY95 495 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ZNF613Q6PF04 617 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 PCSK4Q6UW60 755 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 TMEM251Q8N6I4 163 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ZNF563Q8TA94 476 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 NR4A3Q92570 626 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ZBTB8AQ96BR9 441 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ZNF347Q96SE7 839 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 PRR14Q9BWN1 585 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ADAM19Q9H013 955 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 YY1AP1Q9H869 796 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ACER3Q9NUN7 267 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ARMC1Q9NVT9 282 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 DKKL1Q9UK85 242 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ACAD8Q9UKU7 415 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 FAM32AQ9Y421 112 aaKnown RBP13.03□□□□□ -0.32
UPF1-211ENST00000600868 AP4S1Q9Y587 144 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 ATMQ13315 3056 aa13.03□□□□□ -0.32
UPF1-211ENST00000600868 C7orf72A4D263 438 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 TRAPPC13A5PLN9 417 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 hCG_2039718K7EN88 272 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 ZIC3O60481 467 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 CDC40O60508 579 aaKnown RBP eCLIP13.02□□□□□ -0.33
UPF1-211ENST00000600868 FKBP6O75344 327 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 OR5F1O95221 314 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 NTN1O95631 604 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 HPNP05981 417 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 GP1BBP13224 206 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 PRKCAP17252 672 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 HK1P19367 917 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 MST1P26927 711 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 GDF1P27539 372 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 ADH6P28332 368 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 RFC3P40938 356 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 EIF1P41567 113 aaKnown RBP13.02□□□□□ -0.33
UPF1-211ENST00000600868 SESN3P58005 492 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 PPIAP62937 165 aaKnown RBP13.02□□□□□ -0.33
UPF1-211ENST00000600868 ELF3P78545 371 aaPredicted RBP13.02□□□□□ -0.33
UPF1-211ENST00000600868 PMP22Q01453 160 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 RNFT1Q5M7Z0 435 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 TSPYL5Q86VY4 417 aaPredicted RBP13.02□□□□□ -0.33
UPF1-211ENST00000600868 CYP4Z1Q86W10 505 aa13.02□□□□□ -0.33
UPF1-211ENST00000600868 FAM109AQ8N4B1 249 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms