RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NUP62P37198 522 aaPredicted RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 HTRA4P83105 476 aaPredicted RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 TCEAL5Q5H9L2 206 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 SSX6Q7RTT6 188 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 NDC1Q9BTX1 674 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 SLC38A1Q9H2H9 487 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 RABL2AQ9UBK7 228 aaPredicted RBP17.05■□□□□ 0.32
UPF1-210ENST00000600689 KLK11Q9UBX7 282 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 SCP2D1Q9UJQ7 156 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 TRANK1O15050 2925 aa17.05■□□□□ 0.32
UPF1-210ENST00000600689 LRRN3E7EW58 273 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 KDM4BO94953 1096 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 PLATP00750 562 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 PTBP1P26599 531 aaKnown RBP eCLIP17.04■□□□□ 0.32
UPF1-210ENST00000600689 NAA10P41227 235 aaPredicted RBP17.04■□□□□ 0.32
UPF1-210ENST00000600689 CCR8P51685 355 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 SEMA4CQ9C0C4 833 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 LRRN3Q9H3W5 708 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 RPS6KB2Q9UBS0 482 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 FBXO9Q9UK97 447 aaPredicted RBP17.04■□□□□ 0.32
UPF1-210ENST00000600689 ARPC5O15511 151 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 IGHA1P01876 353 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 SULT1A3P0DMM9 295 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 SULT1A4P0DMN0 295 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 DRD2P14416 443 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 NAGAP17050 411 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 SYN1P17600 705 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 PSMB10P40306 273 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 ZNF77Q15935 545 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 ZNF805Q5CZA5 627 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 PRPF38BQ5VTL8 546 aaKnown RBP17.04■□□□□ 0.32
UPF1-210ENST00000600689 OR4C11Q6IEV9 310 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 GPALPP1Q8IXQ4 340 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 STPG2Q8N412 459 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 TOR1AIP2Q8NFQ8 470 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 OR52B4Q8NGK2 314 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 LGALS14Q8TCE9 139 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 TIMP4Q99727 224 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 PPA2Q9H2U2 334 aa17.04■□□□□ 0.32
UPF1-210ENST00000600689 POLMQ9NP87 494 aaPredicted RBP17.04■□□□□ 0.32
UPF1-210ENST00000600689 ZGLP1P0C6A0 271 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 F8A1P23610 371 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 OR5M10Q6IEU7 315 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 C12orf40Q86WS4 652 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 LINC00471Q8N535 108 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 ZNF614Q8N883 585 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 FANK1Q8TC84 345 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 ACOT11Q8WXI4 607 aaPredicted RBP17.03■□□□□ 0.32
UPF1-210ENST00000600689 PDCD1LG2Q9BQ51 273 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 TMEM168Q9H0V1 697 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 MCCC2Q9HCC0 563 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 KLHL28Q9NXS3 571 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 MTCL1Q9Y4B5 1905 aaKnown RBP17.03■□□□□ 0.32
UPF1-210ENST00000600689 A0A0G2JK05 382 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 C4orf51C9J302 202 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 KHDRBS3O75525 346 aaKnown RBP17.03■□□□□ 0.32
UPF1-210ENST00000600689 BMP7P18075 431 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 CXCL2P19875 107 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 MMP12P39900 470 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 ID2Q02363 134 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 THSD4Q6ZMP0 1018 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 C3P1Q6ZMU1 363 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 MEIOBQ8N635 442 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 SLC16A11Q8NCK7 471 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 NUP43Q8NFH3 380 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 OR13C2Q8NGS9 318 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 PINK1Q9BXM7 581 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 WDR26Q9H7D7 661 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 IL23AQ9NPF7 189 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 IL20Q9NYY1 176 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 USP36Q9P275 1121 aaKnown RBP17.03■□□□□ 0.32
UPF1-210ENST00000600689 ENTPD4Q9Y227 616 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 INSL6Q9Y581 213 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 ALPK2Q86TB3 2170 aa17.03■□□□□ 0.32
UPF1-210ENST00000600689 A0A1W2PR48 441 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 hCG_1807616A0A1W2PRN6 198 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 MT-ND5P03915 603 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 CEBPBP17676 345 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 CERS1P27544 350 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 TEAD1P28347 426 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 MAZP56270 477 aaKnown RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 GRM7Q14831 915 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 NIPAL3Q6P499 406 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 BOLLQ8N9W6 283 aaKnown RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 PEX11GQ96HA9 241 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 OR14A2Q96R54 314 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 GPR174Q9BXC1 333 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 COPS3Q9UNS2 423 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 EXOGQ9Y2C4 368 aaKnown RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 G3V3Q6 166 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 PPM1BO75688 479 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 ZIC2O95409 532 aaPredicted RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 GLULP15104 373 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 GRPRP30550 384 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 FAM122CQ6P4D5 195 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 MEPCEQ7L2J0 689 aaKnown RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 GRHL3Q8TE85 626 aa17.02■□□□□ 0.32
UPF1-210ENST00000600689 ZMYND19Q96E35 227 aaPredicted RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 TOE1Q96GM8 510 aaKnown RBP17.02■□□□□ 0.32
UPF1-210ENST00000600689 UBL7Q96S82 380 aaPredicted RBP17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms