RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 ZNF20P17024 532 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 HOXA6P31267 233 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 TGFBR3Q03167 851 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 GK3PQ14409 553 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 TMEM176BQ3YBM2 270 aaPredicted RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 RHBDD2Q6NTF9 364 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 KCTD18Q6PI47 426 aaPredicted RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 LNX2Q8N448 690 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 SAP25Q8TEE9 199 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 NANOS1Q8WY41 292 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 FAM46AQ96IP4 442 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 SGCZQ96LD1 299 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 RXFP3Q9NSD7 469 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 LRFN1Q9P244 771 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 LAMP5Q9UJQ1 280 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 MYO10Q9HD67 2058 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 DCDC2BA2VCK2 349 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 SPARCP09486 303 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 FTH1P19P0C7X4 201 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 PRKCAP17252 672 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 CDKN2CP42773 168 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 LSM3P62310 102 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 EEF1A1P68104 462 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 HOXC5Q00444 222 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 IL18R1Q13478 541 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 STK11Q15831 433 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 PWWP2BQ6NUJ5 590 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 RETREG3Q86VR2 466 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 D2HGDHQ8N465 521 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 POC5Q8NA72 575 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 OR2T4Q8NH00 348 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 OR8K3Q8NH51 312 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 COQ8BQ96D53 544 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 PHB2Q99623 299 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 CCDC86Q9H6F5 360 aaKnown RBP9.13□□□□□ -0.95
LIG3-216ENST00000593099 P4HTMQ9NXG6 502 aa9.13□□□□□ -0.95
LIG3-216ENST00000593099 MYOFQ9NZM1 2061 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 A0A1W2PR77 199 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 TBX1O43435 398 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 OPN1LWP04000 364 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 TPOP07202 933 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 CRISP1P54107 249 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 SLC26A5P58743 744 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 YBX1P67809 324 aaKnown RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 SPANXN2Q5MJ10 180 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 FCRL6Q6DN72 434 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 MAVSQ7Z434 540 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 CNEP1R1Q8N9A8 125 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 OR8H1Q8NGG4 311 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 OR1N1Q8NGS0 311 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ACOT11Q8WXI4 607 aaPredicted RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 FEVQ99581 238 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 PIGQQ9BRB3 760 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 HDHD2Q9H0R4 259 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 GORASP2Q9H8Y8 452 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 FAM60AQ9NP50 221 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 SH2B3Q9UQQ2 575 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 MED16Q9Y2X0 877 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 IGHV5-10-1A0A0J9YXX1 117 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 IGLV3-19P01714 112 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 GP1BAP07359 652 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 CD82P27701 267 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ISXQ2M1V0 245 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ALG10Q5BKT4 473 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 C5orf46Q6UWT4 87 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 CBLL1Q75N03 491 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ABHD12BQ7Z5M8 362 aaPredicted RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 CMIPQ8IY22 773 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 SLC25A45Q8N413 288 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ZDHHC19Q8WVZ1 309 aaPredicted RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 WDR34Q96EX3 536 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 AP1S3Q96PC3 154 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 MENTQ9BUN1 341 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 POLR2J2Q9GZM3 115 aaKnown RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 TOR3AQ9H497 397 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ZNF768Q9H5H4 540 aaKnown RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 PRDM7Q9NQW5 492 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 TMEM74BQ9NUR3 256 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 OCIAD1Q9NX40 245 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 TMEM14AQ9Y6G1 99 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 MYO16Q9Y6X6 1858 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 A0A087WV62 115 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 A6NIZ1 184 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 RPP14O95059 124 aaKnown RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 HOXB3P14651 431 aaPredicted RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 RAP1BP61224 184 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 RAP1AP62834 184 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 OR1Q1Q15612 314 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 DUSP5Q16690 384 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 HES5Q5TA89 166 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 SPATC1Q76KD6 591 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ZNF283Q8N7M2 679 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 ADAMTS16Q8TE57 1224 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 AP3S1Q92572 193 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 UFD1Q92890 307 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 LHX9Q9NQ69 397 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 DNAJC27Q9NZQ0 273 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 CRNNQ9UBG3 495 aaPredicted RBP9.12□□□□□ -0.95
LIG3-216ENST00000593099 B3GALT1Q9Y5Z6 326 aa9.12□□□□□ -0.95
LIG3-216ENST00000593099 P2RX6O15547 441 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms