RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 ELK4P28324 431 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 MDH1P40925 334 aaKnown RBP17.54■□□□□ 0.4
SS18-209ENST00000578595 MAGEA8P43361 318 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 ASCL1P50553 236 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 RAC1P63000 192 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 KCNJ10P78508 379 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 FOXF2Q12947 444 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 FADDQ13158 208 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 RGNQ15493 299 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 HBMQ6B0K9 141 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 OR2A2Q6IF42 318 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 ADGRE4PQ86SQ3 457 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 GGNQ86UU5 652 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 MCEMP1Q8IX19 187 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 LILRA2Q8N149 483 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 OR10D3Q8NH80 312 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 TMEM234Q8WY98 164 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 ZG16BQ96DA0 208 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 TMEM19Q96HH6 336 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 KLHL15Q96M94 604 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 NPDC1Q9NQX5 325 aaPredicted RBP17.54■□□□□ 0.4
SS18-209ENST00000578595 TMEM45AQ9NWC5 275 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 THUMPD1Q9NXG2 353 aaKnown RBP17.54■□□□□ 0.4
SS18-209ENST00000578595 SLAMF8Q9P0V8 285 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 ZNF629Q9UEG4 869 aaPredicted RBP17.54■□□□□ 0.4
SS18-209ENST00000578595 MCTS1Q9ULC4 181 aaKnown RBP17.54■□□□□ 0.4
SS18-209ENST00000578595 NDUFAF1Q9Y375 327 aa17.54■□□□□ 0.4
SS18-209ENST00000578595 CELSR2Q9HCU4 2923 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 GJE1A6NN92 205 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 EVPLLA8MZ36 301 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 CXCL13O43927 109 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 RCBTB2O95199 551 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 PLGP00747 810 aaPredicted RBP17.53■□□□□ 0.4
SS18-209ENST00000578595 DBIP07108 87 aaKnown RBP17.53■□□□□ 0.4
SS18-209ENST00000578595 GUSBP08236 651 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 PPIBP23284 216 aaKnown RBP17.53■□□□□ 0.4
SS18-209ENST00000578595 SLC7A1P30825 629 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 PGM1P36871 562 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 MVDP53602 400 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 MERTKQ12866 999 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 ESPNLQ6ZVH7 1005 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 GDF7Q7Z4P5 450 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 DHDDSQ86SQ9 333 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 LUZP2Q86TE4 346 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 METTL25Q8N6Q8 603 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 OIT3Q8WWZ8 545 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 MRGPRX4Q96LA9 322 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 SFXN3Q9BWM7 321 aa17.53■□□□□ 0.4
SS18-209ENST00000578595 MTHFD2LQ9H903 347 aaPredicted RBP17.53■□□□□ 0.4
SS18-209ENST00000578595 TNFSF12-TNFSF13A0A0A6YY99 330 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 AGAP5A6NIR3 686 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 BCAS1O75363 584 aaPredicted RBP17.52■□□□□ 0.4
SS18-209ENST00000578595 SMNDC1O75940 238 aaKnown RBP eCLIP17.52■□□□□ 0.4
SS18-209ENST00000578595 NUDT7P0C024 238 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 FCGR2AP12318 317 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 CD1EP15812 388 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 PSMA4P25789 261 aaKnown RBP17.52■□□□□ 0.4
SS18-209ENST00000578595 TFF3Q07654 80 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 MYBPHQ13203 477 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 SELENBP1Q13228 472 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 SNTB1Q13884 538 aaKnown RBP17.52■□□□□ 0.4
SS18-209ENST00000578595 NFYCQ13952 458 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 TMEM176BQ3YBM2 270 aaPredicted RBP17.52■□□□□ 0.4
SS18-209ENST00000578595 LRIF1Q5T3J3 769 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 GCNT6Q5T4J0 391 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 METTL21CQ5VZV1 264 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 OR52P1PQ8NH57 321 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 OR2V1Q8NHB1 315 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 SLC38A5Q8WUX1 472 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 CNOT9Q92600 299 aaKnown RBP17.52■□□□□ 0.4
SS18-209ENST00000578595 MAL2Q969L2 176 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 REXO5Q96IC2 774 aaKnown RBP17.52■□□□□ 0.4
SS18-209ENST00000578595 SLC25A37Q9NYZ2 338 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 VAPAQ9P0L0 249 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 CORO2BQ9UQ03 480 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 ZNF175Q9Y473 711 aa17.52■□□□□ 0.4
SS18-209ENST00000578595 NBPF19A0A087WUL8 3843 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 A0A0J9YW62 118 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 TFPIP10646 304 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 UQCRBP14927 111 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 ADH6P28332 368 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 SHC1P29353 583 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 CPOXP36551 454 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 SESN3P58005 492 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 LIN52Q52LA3 116 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 MRPL2Q5T653 305 aaKnown RBP17.51■□□□□ 0.39
SS18-209ENST00000578595 CGB2Q6NT52 195 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 C3orf33Q6P1S2 294 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 VRK2Q86Y07 508 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 MSRB3Q8IXL7 192 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 CMIPQ8IY22 773 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 NFKBIDQ8NI38 313 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 ST8SIA1Q92185 356 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 UCN2Q96RP3 112 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 TREX2Q9BQ50 279 aaPredicted RBP17.51■□□□□ 0.39
SS18-209ENST00000578595 ZNF385DQ9H6B1 395 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 CCDC134Q9H6E4 229 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 SERINC1Q9NRX5 453 aa17.51■□□□□ 0.39
SS18-209ENST00000578595 PAQR5Q9NXK6 330 aaPredicted RBP17.51■□□□□ 0.39
SS18-209ENST00000578595 A0A1W2PNV4 684 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms