RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 OTX2P32243 289 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 CHRNA3P32297 505 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 NUP62P37198 522 aaPredicted RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 TAGLN2P37802 199 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 METAP1P53582 386 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 HMGCS2P54868 508 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 KCNK10P57789 538 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 PPIAP62937 165 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 NOP14P78316 857 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 BASP1P80723 227 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 DNAJC3Q13217 504 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 CRMP1Q14194 572 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 RCN1Q15293 331 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 ZMYND11Q15326 602 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 ALX1Q15699 326 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 CFAP157Q5JU67 520 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 ZSCAN25Q6NSZ9 544 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 PRSS42Q7Z5A4 293 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 STHQ8IWL8 128 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 SLC22A18ASQ8N1D0 253 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 STEAP2Q8NFT2 490 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 ERMNQ8TAM6 284 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 RNASE8Q8TDE3 154 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 GLYATL1Q969I3 302 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 SGK3Q96BR1 496 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 CXorf58Q96LI9 332 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 TTC25Q96NG3 672 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 TPPP3Q9BW30 176 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 CARD6Q9BX69 1037 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 RAB33BQ9H082 229 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 SLC26A1Q9H2B4 701 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 RMND5AQ9H871 391 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 PSTPIP2Q9H939 334 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 NGBQ9NPG2 151 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 DDX28Q9NUL7 540 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 TAS2R16Q9NYV7 291 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 EIF3KQ9UBQ5 218 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 MLXQ9UH92 298 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 MRTO4Q9UKD2 239 aaKnown RBP3.88□□□□□ -1.79
NUP88-213ENST00000576862 SNX6Q9UNH7 406 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 RNF24Q9Y225 148 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 ATP6V1DQ9Y5K8 247 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 BTAF1O14981 1849 aa3.88□□□□□ -1.79
NUP88-213ENST00000576862 BCORQ6W2J9 1755 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 TUBGCP6Q96RT7 1819 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 SERTM2A0A1B0GWG4 89 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 C5orf51A6NDU8 294 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 MFSD2BA6NFX1 497 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 MEI4A8MW99 385 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 SSX5O60225 188 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 TSPAN2O60636 221 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 JAK2O60674 1132 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 PFKFB2O60825 505 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 MTX2O75431 263 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 CRTAPO75718 401 aaPredicted RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 AKAP3O75969 853 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 UFL1O94874 794 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 MT-ATP6P00846 226 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 TGFAP01135 160 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 OPN1LWP04000 364 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 DUX4L4P0CJ87 422 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 UMPSP11172 480 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 RALBP11234 206 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 SYT1P21579 422 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 CALB2P22676 271 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 SFNP31947 248 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 HMGCLP35914 325 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 HAAOP46952 286 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 STARP49675 285 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 DYNLL1P63167 89 aaKnown RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 CUL1Q13616 776 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 SGCBQ16585 318 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 C14orf28Q4W4Y0 310 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 PRAMEF20Q5VT98 475 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 RHBDD2Q6NTF9 364 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 PAMR1Q6UXH9 720 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 TMCO2Q7Z6W1 182 aaPredicted RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 C11orf42Q8N5U0 333 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 DNAAF3Q8N9W5 541 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 NEK11Q8NG66 645 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 OR6M1Q8NGM8 313 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 DNAJA4Q8WW22 397 aaPredicted RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 GTSF1Q8WW33 167 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 C5orf30Q96GV9 206 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 CCT7Q99832 543 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 ZSCAN5AQ9BUG6 496 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 MRPL37Q9BZE1 423 aaKnown RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 ECT2Q9H8V3 914 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 Q9HAA7 133 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 AMBNQ9NP70 447 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 Q9UF83 564 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 STX8Q9UNK0 236 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 PLEKHA6Q9Y2H5 1048 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 MRPS2Q9Y399 296 aaKnown RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 KIF25-AS1Q9Y6Z4 181 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 ZMYM6O95789 1325 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 TNRC6CQ9HCJ0 1690 aaKnown RBP3.87□□□□□ -1.79
NUP88-213ENST00000576862 RALGAPA1Q6GYQ0 2036 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 COL24A1Q17RW2 1714 aa3.87□□□□□ -1.79
NUP88-213ENST00000576862 AFDNP55196 1824 aaKnown RBP3.86□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms