RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ASB5Q8WWX0 329 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 KIAA1143Q96AT1 154 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 ISG20Q96AZ6 181 aaKnown RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 NSL1Q96IY1 281 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 RPRD1AQ96P16 312 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 RIT2Q99578 217 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 CHP1Q99653 195 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 SLC39A3Q9BRY0 314 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 RAB11FIP5Q9BXF6 653 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 ERVK-6Q9BXR3 956 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 FAM49AQ9H0Q0 323 aaPredicted RBP5.06□□□□□ -1.6
VPS53-219ENST00000576019 RHOJQ9H4E5 214 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 EGLN3Q9H6Z9 239 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 VIPAS39Q9H9C1 493 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 LPAR2Q9HBW0 351 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 S100A14Q9HCY8 104 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP5.06□□□□□ -1.6
VPS53-219ENST00000576019 SMOXQ9NWM0 555 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 FBXL4Q9UKA2 621 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 POMT2Q9UKY4 750 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 EMCNQ9ULC0 261 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 FZR1Q9UM11 496 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 SLC6A5Q9Y345 797 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 FKBP7Q9Y680 259 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 COMMD3-BMI1R4GMX3 469 aa5.06□□□□□ -1.6
VPS53-219ENST00000576019 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP5.06□□□□□ -1.68e-6■■□□□ 12.9
VPS53-219ENST00000576019 KRTAP4-8A0A0G2JLE6 195 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 SNTNA6NMZ2 147 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 RNF212BA8MTL3 300 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 SNURFLB1AK76 121 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 H3BTX0 84 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 RNF113AO15541 343 aaKnown RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 P2RX6O15547 441 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 XPNPEP2O43895 674 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 NXPH2O95156 264 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 OTCP00480 354 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 KRT14P02533 472 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 LYNP07948 512 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 CDKN1BP46527 198 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 SGSHP51688 502 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 SNAP25P60880 206 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 TIMM10P62072 90 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 PLP2Q04941 152 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 SLC10A2Q12908 348 aaPredicted RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 SYPL1Q16563 259 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 PRTGQ2VWP7 1150 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 HLA-BQ31612 363 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 ALKBH6Q3KRA9 238 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 PDSS1Q5T2R2 415 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 KIAA1161Q6NSJ0 714 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 Q6ZRG5 221 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 RFPL4BQ6ZWI9 263 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 BZW1Q7L1Q6 419 aaKnown RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 ZNF627Q7L945 461 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 ITIH5Q86UX2 942 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 VPS36Q86VN1 386 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 PAQR7Q86WK9 346 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 CACUL1Q86Y37 369 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 LDLRAD3Q86YD5 345 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 TGIF2LYQ8IUE0 185 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 KATNAL2Q8IYT4 538 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 RBMXL3Q8N7X1 1067 aaKnown RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 NFAM1Q8NET5 270 aaPredicted RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 KBTBD8Q8NFY9 601 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 RDH11Q8TC12 318 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 LARP4BQ92615 738 aaKnown RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 MCUR1Q96AQ8 359 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 SH3YL1Q96HL8 342 aaPredicted RBP5.05□□□□□ -1.6
VPS53-219ENST00000576019 ANKRD27Q96NW4 1050 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 IL1RL2Q9HB29 575 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 CYP3A43Q9HB55 503 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 C3orf14Q9HBI5 128 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 GSTK1Q9Y2Q3 226 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 WDR45Q9Y484 360 aa5.05□□□□□ -1.6
VPS53-219ENST00000576019 ZNF587BE7ETH6 402 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 NVLO15381 856 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 UPK3AO75631 287 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 ANXA9O76027 345 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 BAG4O95429 457 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 SYF2O95926 243 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 TROVE2P10155 538 aaKnown RBP eCLIP5.04□□□□□ -1.6
VPS53-219ENST00000576019 UQCRBP14927 111 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 KLK2P20151 261 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 CCT3P49368 545 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 PLA2G16P53816 162 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 CDH4P55283 916 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 OR1D5P58170 312 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 RPS15P62841 145 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 EEF1A1P68104 462 aaKnown RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 DRP2Q13474 957 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 C3AR1Q16581 482 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 GGTA1PQ4G0N0 100 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 EFHC1Q5JVL4 640 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 PDZK1Q5T2W1 519 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 EEF1A1P5Q5VTE0 462 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 DMKNQ6E0U4 476 aaPredicted RBP5.04□□□□□ -1.6
VPS53-219ENST00000576019 STEAP1BQ6NZ63 245 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 Q6ZPA2 131 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 LCNL1Q6ZST4 164 aa5.04□□□□□ -1.6
VPS53-219ENST00000576019 SATL1Q86VE3 508 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms