RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 C8BP07358 591 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 IL7RP16871 459 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 ZNF24P17028 368 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 PRKCAP17252 672 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 ME2P23368 584 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 DPP4P27487 766 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 MSX1P28360 303 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 MASP1P48740 699 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 SUMO3P55854 103 aaPredicted RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 SELENOWP63302 87 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 TRIM25Q14258 630 aaKnown RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 DNAL1Q4LDG9 190 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 WIPI1Q5MNZ9 446 aaPredicted RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 INTS11Q5TA45 600 aaKnown RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 GLYATQ6IB77 296 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 ENPP6Q6UWR7 440 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 YTHDF3Q7Z739 585 aaKnown RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 YRDCQ86U90 279 aaKnown RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 FAM109AQ8N4B1 249 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 OR6T1Q8NGN1 323 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 OR5W2Q8NH69 310 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 FIG4Q92562 907 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 SLC35B4Q969S0 331 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 C7orf34Q96L11 122 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 JSRP1Q96MG2 331 aaPredicted RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 GPR137Q96N19 417 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 ZNF607Q96SK3 696 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 DEFB127Q9H1M4 99 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 ACTR3BQ9P1U1 418 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 SEC14L3Q9UDX4 400 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 POMPQ9Y244 141 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 IFT52Q9Y366 437 aa8.41□□□□□ -1.06
VPS35-211ENST00000569950 DIDO1Q9BTC0 2240 aaKnown RBP8.41□□□□□ -1.06
VPS35-211ENST00000569950 UTP20O75691 2785 aaKnown RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 DOPEY1Q5JWR5 2465 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 INTS1Q8N201 2190 aaKnown RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 OR2M5A3KFT3 312 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 TMEM247A6NEH6 219 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 NPIPA5E9PKD4 350 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 FFAR1O14842 300 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 CDC40O60508 579 aaKnown RBP eCLIP8.4□□□□□ -1.06
VPS35-211ENST00000569950 ATP5HO75947 161 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 PDE9AO76083 593 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 SERPINA1P01009 418 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 GDF1P27539 372 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 SHC1P29353 583 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 OR1E2P47887 323 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 DSCR4P56555 118 aaPredicted RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 SESN3P58005 492 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 CRYZQ08257 329 aaKnown RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 FOXF1Q12946 379 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 BNIP2Q12982 314 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 ELOAQ14241 798 aaKnown RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 LARS2Q15031 903 aaKnown RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 QPRTQ15274 297 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 LRRC23Q53EV4 343 aaPredicted RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 NHSL2Q5HYW2 709 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 MYO7BQ6PIF6 2116 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 CCDC121Q6ZUS5 278 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 SLC22A16Q86VW1 577 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 KRT73Q86Y46 540 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 GTPBP8Q8N3Z3 284 aaPredicted RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 LSMEM1Q8N8F7 131 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 OR5M1Q8NGP8 315 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 MIB2Q96AX9 1013 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 CCDC124Q96CT7 223 aaKnown RBP8.4□□□□□ -1.06
VPS35-211ENST00000569950 ASB9Q96DX5 294 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 HSH2DQ96JZ2 352 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 ADAM19Q9H013 955 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 SDHAF3Q9NRP4 125 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 TNFRSF10DQ9UBN6 386 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 MAGEL2Q9UJ55 1249 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 NPIPA1Q9UND3 350 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 SLC6A5Q9Y345 797 aa8.4□□□□□ -1.06
VPS35-211ENST00000569950 ALPK2Q86TB3 2170 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CFAP73A6NFT4 308 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 KDM4EB2RXH2 506 aaPredicted RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 B8ZZF3 427 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 H0YC42 278 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 H3BNH8 94 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 GTPBP1O00178 669 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 TFECO14948 347 aaPredicted RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 SERPINB7O75635 380 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 PRKD3O94806 890 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CRYABP02511 175 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 HPGDP15428 266 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 BMP7P18075 431 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 TCEA1P23193 301 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 RYKP34925 604 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 CLK3P49761 638 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 LHX2P50458 406 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 TPD52P55327 224 aaPredicted RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 CLDN18P56856 261 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 VLDLRP98155 873 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 ALDH6A1Q02252 535 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 PLGLB1Q02325 96 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 C19orf57Q0VDD7 668 aa8.39□□□□□ -1.07
VPS35-211ENST00000569950 TRAP1Q12931 704 aaKnown RBP8.39□□□□□ -1.07
VPS35-211ENST00000569950 GANABQ14697 944 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms