RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 TUBG1P23258 451 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PRKCHP24723 683 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NDUFS1P28331 727 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GTF2E2P29084 291 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 SSTR2P30874 369 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 HOXA13P31271 388 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 RPA3P35244 121 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 POLR2IP36954 125 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 MAGEA2P43356 314 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NRIP1P48552 1158 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ZNF81P51508 661 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 DNA2P51530 1060 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PRKXP51817 358 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TDGF1P3P51864 188 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CDH11P55287 796 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TIRAPP58753 221 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 UBE2G2P60604 165 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 RRAS2P62070 204 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 RPS8P62241 208 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 SNRPEP62304 92 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TFAMQ00059 246 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TNFRSF17Q02223 184 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TLE4Q04727 773 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OVGP1Q12889 678 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TRAF3Q13114 568 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SKP2Q13309 424 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GAB1Q13480 694 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TRA2AQ13595 282 aaKnown RBP eCLIP3.01□□□□□ -1.93
VPS35-208ENST00000568612 IRF3Q14653 427 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 QPRTQ15274 297 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TAF1AQ15573 450 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 INPP5JQ15735 1006 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 NPY5RQ15761 445 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 USF2Q15853 346 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 HAGHQ16775 308 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 C5orf64Q2M2E5 130 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MPEG1Q2M385 716 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 HNRNPA1L2Q32P51 320 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 NDUFAF6Q330K2 333 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ADPRMQ3LIE5 342 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PIGGQ5H8A4 983 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 BEX5Q5H9J7 111 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NHLRC3Q5JS37 347 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CELF3Q5SZQ8 465 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 TPRG1LQ5T0D9 272 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GPRC6AQ5T6X5 926 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 LRRC38Q5VT99 294 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TMEM236Q5W0B7 351 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PLAG1Q6DJT9 500 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OR8G2PQ6IF36 304 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SLC18B1Q6NT16 456 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MRNIPQ6NTE8 343 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MTFR2Q6P444 385 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ULK3Q6PHR2 472 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CLEC9AQ6UXN8 241 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 GDPD4Q6W3E5 623 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 QSOX2Q6ZRP7 698 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CHMP1BQ7LBR1 199 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 IRF2BP2Q7Z5L9 587 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PXKQ7Z7A4 578 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 BIVMQ86UB2 503 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CCDC190Q86UF4 302 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MYPOPQ86VE0 399 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 P2RY8Q86VZ1 359 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 ANGPTL5Q86XS5 388 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PLD3Q8IV08 490 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CPOQ8IVL8 374 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SFTPA1Q8IWL2 248 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CNTN4Q8IWV2 1026 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SLC22A15Q8IZD6 547 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 DEFB107AQ8IZN7 70 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 FSTL5Q8N475 847 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 FAM89BQ8N5H3 189 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MS4A15Q8N5U1 240 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 PARP16Q8N5Y8 322 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 C12orf76Q8N812 135 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 OR2T4Q8NH00 348 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OR5R1Q8NH85 324 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 OR14A16Q8NHC5 309 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 LNX1Q8TBB1 728 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 WDR20Q8TBZ3 569 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 RNASE8Q8TDE3 154 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 ZNF431Q8TF32 576 aaPredicted RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 C2CD4CQ8TF44 421 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TSEN15Q8WW01 171 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 PIH1D2Q8WWB5 315 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 AP3S1Q92572 193 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SLCO2A1Q92959 643 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CREB3L1Q96BA8 519 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 NSUN4Q96CB9 384 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 RSPRY1Q96DX4 576 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 YIPF6Q96EC8 236 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 MRPS24Q96EL2 167 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 ZC3HAV1LQ96H79 300 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 CELF6Q96J87 481 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 RITA1Q96K30 269 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 TAAR6Q96RI8 345 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 CNN2Q99439 309 aaKnown RBP3.01□□□□□ -1.93
VPS35-208ENST00000568612 VAT1Q99536 393 aa3.01□□□□□ -1.93
VPS35-208ENST00000568612 SEPT5Q99719 369 aaPredicted RBP3.01□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms