RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 SLC6A8P48029 635 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 CRISP3P54108 245 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 DSTNP60981 165 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 KCNJ10P78508 379 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 CHRNEQ04844 493 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 FUT5Q11128 374 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 FOXF1Q12946 379 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 FADDQ13158 208 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 PON3Q15166 354 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 SYPL1Q16563 259 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 AGKQ53H12 422 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 SLC25A53Q5H9E4 307 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 COX20Q5RI15 118 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 METTL21CQ5VZV1 264 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 GTF2IRD2BQ6EKJ0 949 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 POMZP3Q6PJE2 187 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 GTF2IRD2Q86UP8 949 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 GGNQ86UU5 652 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 PEX5LQ8IYB4 626 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 LILRA2Q8N149 483 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 FBXO27Q8NI29 283 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 POC1BQ8TC44 478 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 ST8SIA1Q92185 356 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 KLHL15Q96M94 604 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 THUMPD3Q9BV44 507 aaKnown RBP12.05□□□□□ -0.48
CLK3-216ENST00000564468 TRIM8Q9BZR9 551 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 SLC38A1Q9H2H9 487 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 NPHS2Q9NP85 383 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 SERINC1Q9NRX5 453 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 KCNN3Q9UGI6 736 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 KCNE5Q9UJ90 142 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 DCTN4Q9UJW0 460 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 PRDM4Q9UKN5 801 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 PCDHB14Q9Y5E9 798 aa12.05□□□□□ -0.48
CLK3-216ENST00000564468 NF1P21359 2839 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 UQCRHLA0A096LP55 91 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 A0A0G2JND7 137 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 H0YC42 278 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 CLIC1O00299 241 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 NR5A2O00482 541 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 ADAMDEC1O15204 470 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 OIP5O43482 229 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 DNAJA2O60884 412 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 DBIP07108 87 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 PABPC4LP0CB38 370 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 IL7RP16871 459 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 FKBP2P26885 142 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 UQCRC1P31930 480 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 PGM1P36871 562 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 RNF144AP50876 292 aaPredicted RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 TPD52P55327 224 aaPredicted RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 SELENBP1Q13228 472 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 SKP2Q13309 424 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 QPRTQ15274 297 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 MAPK14Q16539 360 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 ZSWIM7Q19AV6 140 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 NDUFAF6Q330K2 333 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 KRTAP21-3Q3LHN1 58 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 LRIF1Q5T3J3 769 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 HBMQ6B0K9 141 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 SLC2A7Q6PXP3 512 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 OLIG3Q7RTU3 272 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 FUNDC1Q8IVP5 155 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 GCNT2Q8N0V5 402 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 ANKFN1Q8N957 763 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 OR10D3Q8NH80 312 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 OR2V1Q8NHB1 315 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 ZNF563Q8TA94 476 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 TSPEARQ8WU66 669 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 WDR60Q8WVS4 1066 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 THOC1Q96FV9 657 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 REXO5Q96IC2 774 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 LURAP1Q96LR2 239 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 PAIP1Q9H074 479 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 ARMC7Q9H6L4 198 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 RNF122Q9H9V4 155 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 EXOSC3Q9NQT5 275 aaKnown RBP12.04□□□□□ -0.48
CLK3-216ENST00000564468 GLRX2Q9NS18 164 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 SLC6A13Q9NSD5 602 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 JKAMPQ9P055 326 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 PACSIN3Q9UKS6 424 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 CORO2BQ9UQ03 480 aa12.04□□□□□ -0.48
CLK3-216ENST00000564468 DCHS2Q6V1P9 2916 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 A0A1W2PNV4 684 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 A0A1W2PP18 115 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 PRAMEF27A3QJZ7 478 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 AGAP5A6NIR3 686 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ETV2O00321 342 aaPredicted RBP12.03□□□□□ -0.48
CLK3-216ENST00000564468 TNFSF11O14788 317 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 MSTNO14793 375 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 CHRM4P08173 479 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 ETFAP13804 333 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 UQCRBP14927 111 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 CPA2P48052 419 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 AGFG1P52594 562 aaKnown RBP12.03□□□□□ -0.48
CLK3-216ENST00000564468 MVDP53602 400 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 CARD18P57730 90 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 SORDQ00796 357 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 FOXF2Q12947 444 aa12.03□□□□□ -0.48
CLK3-216ENST00000564468 MYBPHQ13203 477 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms