RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 OR9I1Q8NGQ6 314 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 DYDC1Q8WWB3 177 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 ZG16BQ96DA0 208 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 C7orf26Q96N11 449 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 LAT2Q9GZY6 243 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 CLEC4MQ9H2X3 399 aaPredicted RBP14.04□□□□□ -0.16
VPS39-203ENST00000561797 POLE3Q9NRF9 147 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 RASSF1Q9NS23 344 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 ARGLU1Q9NWB6 273 aaPredicted RBP14.04□□□□□ -0.16
VPS39-203ENST00000561797 ZIM2Q9NZV7 527 aa14.04□□□□□ -0.16
VPS39-203ENST00000561797 TACC2O95359 2948 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 SH3D21A4FU49 640 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 H6PDO95479 791 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ANP32DO95626 131 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ELK4P28324 431 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ADH6P28332 368 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 KCNJ5P48544 419 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ANXA11P50995 505 aaKnown RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 POLR2JP52435 117 aaKnown RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 CTBP2P56545 445 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 HPCAP84074 193 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 CHRNEQ04844 493 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 SKP2Q13309 424 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 FGFBP1Q14512 234 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 DAZAP2Q15038 168 aaPredicted RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 COX20Q5RI15 118 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ZNF474Q6S9Z5 364 aaPredicted RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 EIF3MQ7L2H7 374 aaKnown RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 FAM214BQ7L5A3 538 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 MIER2Q8N344 545 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ANKFN1Q8N957 763 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ZNF610Q8N9Z0 462 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ROBO4Q8WZ75 1007 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 MRGPRX4Q96LA9 322 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 SAP130Q9H0E3 1048 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 QRSL1Q9H0R6 528 aaKnown RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 SDR39U1Q9NRG7 319 aaPredicted RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 SLC6A13Q9NSD5 602 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 PROCRQ9UNN8 238 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 FREM1Q5H8C1 2179 aa14.03□□□□□ -0.16
VPS39-203ENST00000561797 ANKHD1Q8IWZ3 2542 aaKnown RBP14.03□□□□□ -0.16
VPS39-203ENST00000561797 FAM221AA4D161 298 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 GJE1A6NN92 205 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 BCAS1O75363 584 aaPredicted RBP14.02□□□□□ -0.17
VPS39-203ENST00000561797 CGAP01215 116 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 GUSBP08236 651 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 POU2F1P14859 743 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 RYKP34925 604 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 CD79BP40259 229 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 GUSBP1Q15486 140 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 TIGD2Q4W5G0 525 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 CDC20BQ86Y33 519 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 VPS33AQ96AX1 596 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 GMPPAQ96IJ6 420 aaPredicted RBP14.02□□□□□ -0.17
VPS39-203ENST00000561797 ITCHQ96J02 903 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 SRXN1Q9BYN0 137 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 LIME1Q9H400 295 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 RMND5AQ9H871 391 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.02□□□□□ -0.17
VPS39-203ENST00000561797 NDRG3Q9UGV2 375 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 EMC9Q9Y3B6 208 aa14.02□□□□□ -0.17
VPS39-203ENST00000561797 A0A1W2PNR3 127 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 CLDN24A6NM45 220 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 HMGB1P1B2RPK0 211 aaPredicted RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 POLR3GO15318 223 aaPredicted RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 NTN1O95631 604 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 KRT75O95678 551 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 CHRM4P08173 479 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 NR2F1P10589 423 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 CD8BP10966 210 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 H2AFXP16104 143 aaPredicted RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 PGCP20142 388 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 DNAJA1P31689 397 aaKnown RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 PGM1P36871 562 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 IDH3AP50213 366 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 SESN3P58005 492 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 PPP2R2AP63151 447 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 KCNJ10P78508 379 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 SELENBP1Q13228 472 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 POU4F3Q15319 338 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 EXOC3L2Q2M3D2 409 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 GTDC1Q4AE62 458 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 SLC25A53Q5H9E4 307 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 ZFP90Q8TF47 636 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 REXO5Q96IC2 774 aaKnown RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 DACH2Q96NX9 599 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 TRNT1Q96Q11 434 aaKnown RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 EBF4Q9BQW3 602 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 SLC39A3Q9BRY0 314 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 SLC38A1Q9H2H9 487 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 VIPAS39Q9H9C1 493 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 TIGARQ9NQ88 270 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 TCF7L2Q9NQB0 619 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 INTS9Q9NV88 658 aaKnown RBP14.01□□□□□ -0.17
VPS39-203ENST00000561797 ELOVL5Q9NYP7 299 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 LIPT1Q9Y234 373 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 SLC35A3Q9Y2D2 325 aa14.01□□□□□ -0.17
VPS39-203ENST00000561797 FAM234BA2RU67 622 aa14□□□□□ -0.17
VPS39-203ENST00000561797 CASKO14936 926 aa14□□□□□ -0.17
VPS39-203ENST00000561797 DNAJA2O60884 412 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms