RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 FGFBP1Q14512 234 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 SF3B4Q15427 424 aaKnown RBP eCLIP8.45□□□□□ -1.062e-7■■■□□ 15
LDLR-211ENST00000560173 RIPPLY2Q5TAB7 128 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 NSUN5P2Q63ZY6 315 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ZNF787Q6DD87 383 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 C16orf89Q6UX73 402 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ADGRE4PQ86SQ3 457 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 LACC1Q8IV20 430 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 CCDC71Q8IV32 467 aaPredicted RBP8.45□□□□□ -1.06
LDLR-211ENST00000560173 C10orf111Q8N326 155 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 TMCO5AQ8N6Q1 288 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 OR5W2Q8NH69 310 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 POC1BQ8TC44 478 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ZPLD1Q8TCW7 415 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 GPR119Q8TDV5 335 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 SLC38A5Q8WUX1 472 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 PMM1Q92871 262 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ZBTB8AQ96BR9 441 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ZNF524Q96C55 264 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 SDCCAG3Q96C92 435 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 TMEM19Q96HH6 336 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 RNF145Q96MT1 663 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 NPAS1Q99742 590 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 TREX2Q9BQ50 279 aaPredicted RBP8.45□□□□□ -1.06
LDLR-211ENST00000560173 LAT2Q9GZY6 243 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 MTHFD2LQ9H903 347 aaPredicted RBP8.45□□□□□ -1.06
LDLR-211ENST00000560173 A4GALTQ9NPC4 353 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 CALML5Q9NZT1 146 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ARMCX1Q9P291 453 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 NIPSNAP3AQ9UFN0 247 aaPredicted RBP8.45□□□□□ -1.06
LDLR-211ENST00000560173 RNF6Q9Y252 685 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 SLC35A3Q9Y2D2 325 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 NDUFAF1Q9Y375 327 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 ZNF337Q9Y3M9 751 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 PKDREJQ9NTG1 2253 aa8.45□□□□□ -1.06
LDLR-211ENST00000560173 A0A0G2JNJ9 132 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 MBD3L4A6NDZ8 208 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 MBD3L3A6NE82 208 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 MBD3L5A6NJ08 208 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 CLDN24A6NM45 220 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CLCA1A8K7I4 914 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 H0YC42 278 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 H3BML4 177 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 ETV2O00321 342 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 FBP2O00757 339 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 MGRN1O60291 552 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CIB2O75838 187 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 TOXO94900 526 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CLDN14O95500 239 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 NTN1O95631 604 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 NUDT14O95848 222 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 DBIP07108 87 aaKnown RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 UBTFL6P0CB48 400 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 COX4I1P13073 169 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 GPX2P18283 190 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 ELK4P28324 431 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CHRNB4P30926 498 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CEACAM8P31997 349 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 EIF1P41567 113 aaKnown RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 CCR4P51679 360 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CRISP3P54108 245 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 TPD52P55327 224 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 CLDN20P56880 219 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 ELF3P78545 371 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 FOXF1Q12946 379 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CBFBQ13951 182 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 NFYCQ13952 458 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 GNA13Q14344 377 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 QPRTQ15274 297 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 TOMM34Q15785 309 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 RUNDC3AQ59EK9 446 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 COQ5Q5HYK3 327 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 RPS26P11Q5JNZ5 115 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 GCNT6Q5T4J0 391 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 PRAMEF8Q5VWM4 474 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 PRAMEF7Q5VXH5 474 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 GGNQ86UU5 652 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CMIPQ8IY22 773 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 UBQLNLQ8IYU4 475 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 MEIOBQ8N635 442 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 MBD3L2Q8NHZ7 208 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 WDR60Q8WVS4 1066 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 ASB5Q8WWX0 329 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CNOT9Q92600 299 aaKnown RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 MAL2Q969L2 176 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 ANKRD27Q96NW4 1050 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 UCN2Q96RP3 112 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 TRIB1Q96RU8 372 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CGREF1Q99674 301 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CALHM2Q9HA72 323 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 EFCAB1Q9HAE3 211 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 BCL2L10Q9HD36 194 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 EXOSC3Q9NQT5 275 aaKnown RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 ST6GALNAC1Q9NSC7 600 aaPredicted RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 DNAJB12Q9NXW2 375 aaKnown RBP8.44□□□□□ -1.06
LDLR-211ENST00000560173 TAS2R1Q9NYW7 299 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 COQ3Q9NZJ6 369 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CLCF1Q9UBD9 225 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 Q9UFV3 132 aa8.44□□□□□ -1.06
LDLR-211ENST00000560173 CORO2BQ9UQ03 480 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms