RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 TAS2R10Q9NYW0 307 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 TESQ9UGI8 421 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 ICAM5Q9UMF0 924 aa8.4□□□□□ -1.06
LDLR-210ENST00000559340 FAM32AQ9Y421 112 aaKnown RBP8.4□□□□□ -1.06
LDLR-210ENST00000559340 SHANK1Q9Y566 2161 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ARHGAP21Q5T5U3 1957 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ZNF462Q96JM2 2506 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 TNFSF12-TNFSF13A0A0A6YY99 330 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 TRGV5A0A0B4J1U4 118 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 PINLYPA6NC86 204 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 LRRC3CA6NJW4 275 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 FAM166BA8MTA8 275 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 NPIPA5E9PKD4 350 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 SUSD5O60279 629 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 TPST1O60507 370 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ACTL6AO96019 429 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 OPN1SWP03999 348 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 IFNW1P05000 195 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ZNF17P17021 662 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 CD247P20963 164 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 RYKP34925 604 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 MSX2P35548 267 aaPredicted RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 MAP2K6P52564 334 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 CHRNB3Q05901 458 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 RBPJQ06330 500 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 FLOT2Q14254 428 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 SF3B4Q15427 424 aaKnown RBP eCLIP8.39□□□□□ -1.073e-7■■■■□ 22.3
LDLR-210ENST00000559340 INPP5JQ15735 1006 aaPredicted RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 NRF1Q16656 503 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 DUSP7Q16829 419 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ZNF800Q2TB10 664 aaPredicted RBP eCLIP8.39□□□□□ -1.07
LDLR-210ENST00000559340 FAM98BQ52LJ0 330 aaKnown RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 C1orf146Q5VVC0 180 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 WBP2NLQ6ICG8 309 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ENPP6Q6UWR7 440 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 HMGN2P46Q86SG4 172 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 CARM1Q86X55 608 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 SPPL2CQ8IUH8 684 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 GHDCQ8N2G8 530 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 Q8NA96 180 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 DNAJA4Q8WW22 397 aaPredicted RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 CCDC124Q96CT7 223 aaKnown RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 CLPTM1LQ96KA5 538 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 MRGPRX4Q96LA9 322 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ARHGDIGQ99819 225 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 RTN4RQ9BZR6 473 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 PCDHAC1Q9H158 963 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 DEFB127Q9H1M4 99 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 UBQLN3Q9H347 655 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ZNF703Q9H7S9 590 aaPredicted RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 YY1AP1Q9H869 796 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ZDHHC11Q9H8X9 412 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 ACER3Q9NUN7 267 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 MED17Q9NVC6 651 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 RLIMQ9NVW2 624 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 LUZP4Q9P127 313 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 GMPR2Q9P2T1 348 aaKnown RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 FBXL2Q9UKC9 423 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 NPIPA1Q9UND3 350 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 SH3GLB1Q9Y371 365 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 SPIN1Q9Y657 262 aaPredicted RBP8.39□□□□□ -1.07
LDLR-210ENST00000559340 MYO7BQ6PIF6 2116 aa8.39□□□□□ -1.07
LDLR-210ENST00000559340 CENPVL1A0A0U1RR11 272 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 C7orf72A4D263 438 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 CLDN24A6NM45 220 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 GJE1A6NN92 205 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 ADAM10O14672 748 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 CDC40O60508 579 aaKnown RBP eCLIP8.38□□□□□ -1.07
LDLR-210ENST00000559340 IGHG3P01860 377 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 GKN3PP0CG01 181 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 PEPDP12955 493 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 EDN3P14138 238 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 CHMP24386 653 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 RFC3P40938 356 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 APOBEC1P41238 236 aaKnown RBP8.38□□□□□ -1.07
LDLR-210ENST00000559340 SLC1A3P43003 542 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 MAGEA5P43359 124 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 IDH2P48735 452 aaKnown RBP8.38□□□□□ -1.07
LDLR-210ENST00000559340 SESN3P58005 492 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 PMP22Q01453 160 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 QPRTQ15274 297 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 SLC25A53Q5H9E4 307 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 PDSS1Q5T2R2 415 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 RAET1LQ5VY80 246 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 ARHGAP11AQ6P4F7 1023 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 ZNF613Q6PF04 617 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 CBLN3Q6UW01 205 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 CYP2R1Q6VVX0 501 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 TRILQ7L0X0 811 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 GRINAQ7Z429 371 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 YRDCQ86U90 279 aaKnown RBP8.38□□□□□ -1.07
LDLR-210ENST00000559340 CADM2Q8N3J6 435 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 LSMEM1Q8N8F7 131 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 FAM83FQ8NEG4 500 aaPredicted RBP8.38□□□□□ -1.07
LDLR-210ENST00000559340 GPR32P1Q8NGA4 272 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 CPT1CQ8TCG5 803 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 SARAFQ96BY9 339 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 SNRNP40Q96DI7 357 aaKnown RBP8.38□□□□□ -1.07
LDLR-210ENST00000559340 HSH2DQ96JZ2 352 aa8.38□□□□□ -1.07
LDLR-210ENST00000559340 GPR137Q96N19 417 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms