RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 PNLIPRP2P54317 469 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 FAM27E3Q08E93 113 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 ZNF155Q12901 538 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 EFR3AQ14156 821 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 CAPRIN1Q14444 709 aaKnown RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 MLC1Q15049 377 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 MTX3Q5HYI7 312 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 LCN8Q6JVE9 175 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 Q71RC1 249 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 AQP12AQ8IXF9 295 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 TRIML2Q8N7C3 387 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 OR52E4Q8NGH9 312 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 CDC26Q8NHZ8 85 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 SMPDL3BQ92485 455 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 GFM2Q969S9 779 aaKnown RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 CCDC124Q96CT7 223 aaKnown RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 STARD4Q96DR4 205 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 DUS3LQ96G46 650 aaKnown RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 PANX1Q96RD7 426 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 CPPED1Q9BRF8 314 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 SLC39A3Q9BRY0 314 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 PIGMQ9H3S5 423 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 DSN1Q9H410 356 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 RAD21L1Q9H4I0 556 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 ALG2Q9H553 416 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 ACSS1Q9NUB1 689 aaPredicted RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 VAPAQ9P0L0 249 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 SH3BP4Q9P0V3 963 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 SLAMF8Q9P0V8 285 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 STX18Q9P2W9 335 aaKnown RBP9.53□□□□□ -0.88
SHMT2-215ENST00000554656 MAGEL2Q9UJ55 1249 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 PACSIN3Q9UKS6 424 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 PCDHGB4Q9UN71 923 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 PCDHB14Q9Y5E9 798 aa9.53□□□□□ -0.88
SHMT2-215ENST00000554656 MYO1GB0I1T2 1018 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 MSTNO14793 375 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 C8BP07358 591 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 HOXB6P17509 224 aaKnown RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 LOXP28300 417 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 MC3RP41968 323 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 MAGEA8P43361 318 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 KIR2DL2P43627 348 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 SUCLG1P53597 346 aaKnown RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 MS4A2Q01362 244 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 LIPEQ05469 1076 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 CCNIQ14094 377 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 BCL2A1Q16548 175 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 ZNF385BQ569K4 471 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 RABL3Q5HYI8 236 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 ZNF474Q6S9Z5 364 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 BTLAQ7Z6A9 289 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 DHFR2Q86XF0 187 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 CALHM3Q86XJ0 350 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 MSRB3Q8IXL7 192 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 UBQLNLQ8IYU4 475 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 SAMD14Q8IZD0 417 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 OR4K17Q8NGC6 315 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 OR5M1Q8NGP8 315 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 OR5P2Q8WZ92 322 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 FIG4Q92562 907 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 WFIKKN1Q96NZ8 548 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 KCTD14Q9BQ13 255 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 ECSITQ9BQ95 431 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 PIGQQ9BRB3 760 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 OPN3Q9H1Y3 402 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 KAT8Q9H7Z6 458 aaKnown RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 NEUROD4Q9HD90 331 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 BEX4Q9NWD9 120 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 TAS2R9Q9NYW1 312 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 SLC25A37Q9NYZ2 338 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 MED11Q9P086 117 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 C6orf203Q9P0P8 240 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.52□□□□□ -0.89
SHMT2-215ENST00000554656 PRDM4Q9UKN5 801 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 EDARQ9UNE0 448 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 SNX13Q9Y5W8 968 aa9.52□□□□□ -0.89
SHMT2-215ENST00000554656 A0A087WV62 115 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 A0A1W2PRB8 838 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 TCRBV3S1A0A5B6 114 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 OR2M5A3KFT3 312 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 SLC22A20A6NK97 555 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 FAM220BPB1ANY3 271 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 SHISA8B8ZZ34 492 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 UPK1AO00322 258 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 PDPK1O15530 556 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 SMNDC1O75940 238 aaKnown RBP eCLIP9.51□□□□□ -0.89
SHMT2-215ENST00000554656 CGAP01215 116 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 UMPSP11172 480 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 GPX2P18283 190 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 DSCR4P56555 118 aaPredicted RBP9.51□□□□□ -0.89
SHMT2-215ENST00000554656 CLDN20P56880 219 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 LTBQ06643 244 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 GAB1Q13480 694 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 GUSBP1Q15486 140 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 ERICH5Q6P6B1 374 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 TMEM107Q6UX40 140 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 C22orf34Q6ZV56 151 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 SERPINA11Q86U17 422 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 OR2L13Q8N349 312 aa9.51□□□□□ -0.89
SHMT2-215ENST00000554656 RNF148Q8N7C7 305 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms