RNA–Protein interactions for RNA: ENST00000543123.1

RTN3-212, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-212ENST00000543123 ETV4P43268 484 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 LTBQ06643 244 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 P2RY6Q15077 328 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 QPRTQ15274 297 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 PDCD2Q16342 344 aaPredicted RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 DPY19L1Q2PZI1 675 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 TMEM176BQ3YBM2 270 aaPredicted RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 SLC25A53Q5H9E4 307 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 DDX59Q5T1V6 619 aaKnown RBP eCLIP11.7□□□□□ -0.54
RTN3-212ENST00000543123 ANXA8L1Q5VT79 327 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 EIF3MQ7L2H7 374 aaKnown RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 SSX8Q7RTT4 187 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 C6orf120Q7Z4R8 191 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 YTHDF3Q7Z739 585 aaKnown RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 LRRC34Q8IZ02 419 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 MREGQ8N565 214 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 OR8J2Q8NGG1 315 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 OR5D16Q8NGK9 328 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 RFWD2Q8NHY2 731 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 GPR119Q8TDV5 335 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 ABHD3Q8WU67 409 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 TMEM234Q8WY98 164 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 ROBO4Q8WZ75 1007 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 ST8SIA1Q92185 356 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 PLPPR2Q96GM1 343 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 SDF2Q99470 211 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 DPY30Q9C005 99 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 SSU72Q9NP77 194 aaKnown RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 RAP2CQ9Y3L5 183 aa11.7□□□□□ -0.54
RTN3-212ENST00000543123 SPIN1Q9Y657 262 aaPredicted RBP11.7□□□□□ -0.54
RTN3-212ENST00000543123 ETV2O00321 342 aaPredicted RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 KLF4O43474 513 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 OIP5O43482 229 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 NTN1O95631 604 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 CSTAP01040 98 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 HEXAP06865 529 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 PGCP20142 388 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 LOXP28300 417 aaPredicted RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 SHC1P29353 583 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 CLNS1AP54105 237 aaKnown RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 RAC3P60763 192 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 ABCE1P61221 599 aaKnown RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 HPCAP84074 193 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 GPR68Q15743 365 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 CHI3L2Q15782 390 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 ZNF141Q15928 474 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 ARHGAP11BQ3KRB8 267 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 PDZK1Q5T2W1 519 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 TFAP2EQ6VUC0 442 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 GABRG1Q8N1C3 465 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 ATP6V1C2Q8NEY4 427 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 OR4A15Q8NGL6 344 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 MIPOL1Q8TD10 442 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 SLC25A43Q8WUT9 341 aaPredicted RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 KISS1RQ969F8 398 aaPredicted RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 S100PBPQ96BU1 408 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 COX4I2Q96KJ9 171 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 Q96MF0 132 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 SRXN1Q9BYN0 137 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 LAT2Q9GZY6 243 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 ESRP2Q9H6T0 727 aaKnown RBP11.69□□□□□ -0.54
RTN3-212ENST00000543123 AKTIPQ9H8T0 292 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 POLE3Q9NRF9 147 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 SLC35A3Q9Y2D2 325 aa11.69□□□□□ -0.54
RTN3-212ENST00000543123 HS3ST1O14792 307 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 CYP7B1O75881 506 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 FESP07332 822 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 GUSBP08236 651 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 NID1P14543 1247 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 PAX1P15863 534 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 CREB1P16220 341 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 ENPP1P22413 925 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 PTH2RP49190 550 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 KHKP50053 298 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 RNF144AP50876 292 aaPredicted RBP11.68□□□□□ -0.54
RTN3-212ENST00000543123 RPL14P50914 215 aaKnown RBP11.68□□□□□ -0.54
RTN3-212ENST00000543123 RPS26P62854 115 aaKnown RBP11.68□□□□□ -0.54
RTN3-212ENST00000543123 CSNK2A1P68400 391 aaPredicted RBP11.68□□□□□ -0.54
RTN3-212ENST00000543123 SKP2Q13309 424 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 TOMM34Q15785 309 aaPredicted RBP11.68□□□□□ -0.54
RTN3-212ENST00000543123 NDUFAF6Q330K2 333 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 SFRP5Q5T4F7 317 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 OR4F3Q6IEY1 312 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 C22orf34Q6ZV56 151 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 CROCCP2Q86T23 111 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 TUSC5Q8IXB3 177 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 ZNF611Q8N823 705 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 ZNF781Q8N8C0 355 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 HSD17B8Q92506 261 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 TESCQ96BS2 214 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 PKNOX2Q96KN3 472 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 KLHDC3Q9BQ90 382 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 TMEM204Q9BSN7 226 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 POTEKPQ9BYX7 375 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 ZNF350Q9GZX5 532 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 COQ10BQ9H8M1 238 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 BCO1Q9HAY6 547 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 RNF115Q9Y4L5 304 aa11.68□□□□□ -0.54
RTN3-212ENST00000543123 KCNE3Q9Y6H6 103 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms